Analysis of interatomic Contacts of Structural Units in PDB entry:
9CRV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9CRV entry

There are 7 chains in PDB entry 9CRV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 8	VAL 487
B	ASP 10	ARG 418
C	GLU 24	LEU 434
D	ASN 8	VAL 487
E	ASN 9	ASN 414
K	VAL 2	THR 118
L	ASN 1	LYS 106

There are 45 helices in PDB entry 9CRV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	21	Right-handed alpha
Helix 2	AA2	A	86	90	Right-handed 310
Helix 3	AA3	A	170	175	Right-handed 310
Helix 4	AA4	A	218	225	Right-handed alpha
Helix 5	AA5	A	225	230	Right-handed alpha
Helix 6	AA6	A	231	239	Right-handed alpha
Helix 7	AA7	A	246	268	Right-handed alpha
Helix 8	AA8	A	279	307	Right-handed alpha
Helix 9	AA9	A	461	486	Right-handed alpha
Helix 10	AB1	B	12	24	Right-handed alpha
Helix 11	AB2	B	72	76	Right-handed 310
Helix 12	AB3	B	87	94	Right-handed 310
Helix 13	AB4	B	174	177	Right-handed 310
Helix 14	AB5	B	223	228	Right-handed alpha
Helix 15	AB6	B	230	243	Right-handed alpha
Helix 16	AB7	B	244	247	Right-handed 310
Helix 17	AB8	B	251	274	Right-handed alpha
Helix 18	AB9	B	284	310	Right-handed alpha
Helix 19	AC1	B	390	417	Right-handed alpha
Helix 20	AC2	C	25	35	Right-handed alpha
Helix 21	AC3	C	99	103	Right-handed 310
Helix 22	AC4	C	233	240	Right-handed alpha
Helix 23	AC5	C	240	251	Right-handed alpha
Helix 24	AC6	C	252	255	Right-handed 310
Helix 25	AC7	C	261	287	Right-handed alpha
Helix 26	AC8	C	294	322	Right-handed alpha
Helix 27	AC9	C	411	434	Right-handed alpha
Helix 28	AD1	D	9	21	Right-handed alpha
Helix 29	AD2	D	84	91	Right-handed 310
Helix 30	AD3	D	170	173	Right-handed 310
Helix 31	AD4	D	220	225	Right-handed alpha
Helix 32	AD5	D	225	242	Right-handed alpha
Helix 33	AD6	D	246	267	Right-handed alpha
Helix 34	AD7	D	279	307	Right-handed alpha
Helix 35	AD8	D	462	486	Right-handed alpha
Helix 36	AD9	E	10	22	Right-handed alpha
Helix 37	AE1	E	86	91	Right-handed alpha
Helix 38	AE2	E	141	145	Right-handed 310
Helix 39	AE3	E	174	176	Right-handed 310
Helix 40	AE4	E	222	229	Right-handed alpha
Helix 41	AE5	E	229	241	Right-handed alpha
Helix 42	AE6	E	242	246	Right-handed 310
Helix 43	AE7	E	250	273	Right-handed alpha
Helix 44	AE8	E	285	310	Right-handed alpha
Helix 45	AE9	E	387	412	Right-handed alpha

There are 24 sheets in PDB entry 9CRV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	83	first strand
Strand 2	A	114	118	anti-parallel
Strand 3	A	123	128	anti-parallel
Strand 4	A	64	68	anti-parallel
Strand 5	A	36	40	anti-parallel
Strand 6	A	164	168	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	51	first strand
Strand 2	A	56	61	anti-parallel
Strand 3	A	130	135	anti-parallel
Strand 4	A	101	106	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	98	first strand
Strand 2	A	153	156	anti-parallel
Strand 3	A	203	216	anti-parallel
Strand 4	A	147	150	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	98	first strand
Strand 2	A	153	156	anti-parallel
Strand 3	A	203	216	anti-parallel
Strand 4	A	186	200	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	86	first strand
Strand 2	B	119	121	anti-parallel
Strand 3	B	127	138	anti-parallel
Strand 4	B	59	69	anti-parallel
Strand 5	B	39	54	anti-parallel
Strand 6	B	167	171	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	108	109	first strand
Strand 2	B	127	138	anti-parallel
Strand 3	B	59	69	anti-parallel
Strand 4	B	39	54	anti-parallel
Strand 5	B	179	181	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	101	first strand
Strand 2	B	150	159	anti-parallel
Strand 3	B	209	221	anti-parallel
Strand 4	B	191	204	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	95	98	first strand
Strand 2	C	129	134	anti-parallel
Strand 3	C	138	150	anti-parallel
Strand 4	C	71	83	anti-parallel
Strand 5	C	51	66	anti-parallel
Strand 6	C	179	183	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	121	first strand
Strand 2	C	138	150	anti-parallel
Strand 3	C	71	83	anti-parallel
Strand 4	C	51	66	anti-parallel
Strand 5	C	189	190	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	111	113	first strand
Strand 2	C	168	171	anti-parallel
Strand 3	C	218	231	anti-parallel
Strand 4	C	162	165	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	111	113	first strand
Strand 2	C	168	171	anti-parallel
Strand 3	C	218	231	anti-parallel
Strand 4	C	201	215	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	81	83	first strand
Strand 2	D	114	118	anti-parallel
Strand 3	D	123	128	anti-parallel
Strand 4	D	64	68	anti-parallel
Strand 5	D	36	51	anti-parallel
Strand 6	D	164	167	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	101	106	first strand
Strand 2	D	130	135	anti-parallel
Strand 3	D	56	61	anti-parallel
Strand 4	D	36	51	anti-parallel
Strand 5	D	175	176	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	96	98	first strand
Strand 2	D	147	156	anti-parallel
Strand 3	D	207	215	anti-parallel
Strand 4	D	188	196	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	199	200	first strand
Strand 2	D	203	204	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	82	85	first strand
Strand 2	E	116	121	anti-parallel
Strand 3	E	128	137	anti-parallel
Strand 4	E	58	69	anti-parallel
Strand 5	E	38	49	anti-parallel
Strand 6	E	166	170	parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	82	85	first strand
Strand 2	E	116	121	anti-parallel
Strand 3	E	128	137	anti-parallel
Strand 4	E	58	69	anti-parallel
Strand 5	E	38	49	anti-parallel
Strand 6	E	178	180	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	98	100	first strand
Strand 2	E	151	158	anti-parallel
Strand 3	E	207	220	anti-parallel
Strand 4	E	190	204	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	3	6	first strand
Strand 2	K	21	25	anti-parallel
Strand 3	K	78	80	anti-parallel
Strand 4	K	71	73	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	12	first strand
Strand 2	K	112	116	parallel
Strand 3	K	93	98	anti-parallel
Strand 4	K	34	39	anti-parallel
Strand 5	K	45	52	anti-parallel
Strand 6	K	57	60	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	22	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	19	20	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	22	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	65	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	12	first strand
Strand 2	L	102	104	parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	45	48	first strand
Strand 2	L	35	38	anti-parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	96	97	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9CRV

Analysis of interatomic Contacts of Structural Units in PDB entry:
9CRV