Analysis of interatomic Contacts of Structural Units in PDB entry:
9CS1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9CS1 entry

There are 5 chains in PDB entry 9CS1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 423GLY 807
C
 PHE 2TRP 6
C
 TRP 8GLY 16
D
 TRP 1ASN 2
D
 SER 4PHE 7
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 4 helices in PDB entry 9CS1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
448 452Right-handed 310
Helix 2
AA2
A
497 500Right-handed 310
Helix 3
AA3
A
542 552Right-handed alpha
Helix 4
AA4
A
647 651Right-handed 310
Back to top of page

There are 2 sheets in PDB entry 9CS1. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 18 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
2 6first strand
Strand 2
A
424 433anti-parallel
Strand 3
A
802 806anti-parallel
Strand 4
A
781 792anti-parallel
Strand 5
A
767 778anti-parallel
Strand 6
A
733 745anti-parallel
Strand 7
A
710 720anti-parallel
Strand 8
A
628 640anti-parallel
Strand 9
A
608 620anti-parallel
Strand 10
A
590 600anti-parallel
Strand 11
A
564 579anti-parallel
Strand 12
A
523 537anti-parallel
Strand 13
A
505 518anti-parallel
Strand 14
A
484 495anti-parallel
Strand 15
A
466 475anti-parallel
Strand 16
A
455 462anti-parallel
Strand 17
A
437 446anti-parallel
Strand 18
A
424 433anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
662 663first strand
Strand 2
A
799 800anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il