Analysis of interatomic Contacts of Structural Units in PDB entry:
9CSE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9CSE entry

There is 1 chain in PDB entry 9CSE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 4168ASP 4458
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 3 helices in PDB entry 9CSE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4196 4203Right-handed alpha
Helix 2
AA2
A
4206 4211Right-handed 310
Helix 3
AA3
A
4297 4301Right-handed 310
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There are 5 sheets in PDB entry 9CSE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4174 4179first strand
Strand 2
A
4355 4365anti-parallel
Strand 3
A
4184 4186anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4174 4179first strand
Strand 2
A
4355 4365anti-parallel
Strand 3
A
4417 4428anti-parallel
Strand 4
A
4388 4391anti-parallel
Strand 5
A
4394 4398anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4214 4217first strand
Strand 2
A
4233 4236parallel
Strand 3
A
4253 4255parallel
Strand 4
A
4273 4275parallel
Strand 5
A
4291 4293parallel
Strand 6
A
4331 4334parallel
Strand 7
A
4337 4341anti-parallel
Strand 8
A
4348 4350anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4225 4227first strand
Strand 2
A
4244 4246parallel
Strand 3
A
4264 4266parallel
Strand 4
A
4282 4284parallel
Strand 5
A
4320 4327parallel
Strand 6
A
4311 4317anti-parallel
Strand 7
A
4302 4305anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4405 4407first strand
Strand 2
A
4374 4381anti-parallel
Strand 3
A
4435 4444anti-parallel
Strand 4
A
4448 4457anti-parallel
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