Analysis of interatomic Contacts of Structural Units in PDB entry:
9CSJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9CSJ entry

There are 3 chains in PDB entry 9CSJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 298
B
 ALA 2GLY 298
C
 ARG 4LYS 293
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 9CSJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 26Right-handed alpha
Helix 2
AA2
A
62 66Right-handed 310
Helix 3
AA3
A
93 103Right-handed alpha
Helix 4
AA4
A
147 156Right-handed alpha
Helix 5
AA5
A
207 209Right-handed 310
Helix 6
AA6
A
210 221Right-handed alpha
Helix 7
AA7
A
258 265Right-handed alpha
Helix 8
AA8
A
270 282Right-handed alpha
Helix 9
AA9
A
283 291Right-handed alpha
Helix 10
AB1
B
15 26Right-handed alpha
Helix 11
AB2
B
62 66Right-handed 310
Helix 12
AB3
B
93 103Right-handed alpha
Helix 13
AB4
B
147 156Right-handed alpha
Helix 14
AB5
B
207 209Right-handed 310
Helix 15
AB6
B
210 221Right-handed alpha
Helix 16
AB7
B
258 265Right-handed alpha
Helix 17
AB8
B
270 282Right-handed alpha
Helix 18
AB9
B
283 291Right-handed alpha
Helix 19
AC1
C
15 26Right-handed alpha
Helix 20
AC2
C
62 66Right-handed 310
Helix 21
AC3
C
93 103Right-handed alpha
Helix 22
AC4
C
147 156Right-handed alpha
Helix 23
AC5
C
207 209Right-handed 310
Helix 24
AC6
C
210 221Right-handed alpha
Helix 25
AC7
C
258 265Right-handed alpha
Helix 26
AC8
C
270 282Right-handed alpha
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There are 8 sheets in PDB entry 9CSJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 38first strand
Strand 2
A
52 59anti-parallel
Strand 3
A
68 74anti-parallel
Strand 4
A
5 13parallel
Strand 5
A
201 206anti-parallel
Strand 6
A
252 257parallel
Strand 7
A
237 246anti-parallel
Strand 8
A
224 234anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 79first strand
Strand 2
A
296 297parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 111first strand
Strand 2
A
114 118anti-parallel
Strand 3
A
124 128anti-parallel
Strand 4
A
86 92parallel
Strand 5
A
138 145anti-parallel
Strand 6
A
183 188parallel
Strand 7
A
172 176anti-parallel
Strand 8
A
162 167anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 38first strand
Strand 2
B
52 59anti-parallel
Strand 3
B
68 74anti-parallel
Strand 4
B
5 13parallel
Strand 5
B
201 206anti-parallel
Strand 6
B
252 257parallel
Strand 7
B
237 246anti-parallel
Strand 8
B
224 234anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 79first strand
Strand 2
B
296 297parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
108 111first strand
Strand 2
B
114 118anti-parallel
Strand 3
B
124 128anti-parallel
Strand 4
B
86 92parallel
Strand 5
B
138 145anti-parallel
Strand 6
B
183 188parallel
Strand 7
B
172 176anti-parallel
Strand 8
B
162 167anti-parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
30 36first strand
Strand 2
C
54 59anti-parallel
Strand 3
C
68 73anti-parallel
Strand 4
C
5 13parallel
Strand 5
C
201 206anti-parallel
Strand 6
C
252 257parallel
Strand 7
C
237 246anti-parallel
Strand 8
C
224 234anti-parallel
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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
108 111first strand
Strand 2
C
114 118anti-parallel
Strand 3
C
124 128anti-parallel
Strand 4
C
86 92parallel
Strand 5
C
138 145anti-parallel
Strand 6
C
183 188parallel
Strand 7
C
172 176anti-parallel
Strand 8
C
162 167anti-parallel
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