Analysis of interatomic Contacts of Structural Units in PDB entry:
9CTJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9CTJ entry

There are 7 chains in PDB entry 9CTJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 8	VAL 487
B	ASN 11	ARG 418
C	GLY 7	VAL 447
D	ASN 10	ASN 414
E	GLY 25	ARG 232
I	ASN 1	LEU 105
J	VAL 2	SER 117

There are 39 helices in PDB entry 9CTJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	20	Right-handed alpha
Helix 2	AA2	A	84	88	Right-handed 310
Helix 3	AA3	A	139	143	Right-handed 310
Helix 4	AA4	A	170	173	Right-handed 310
Helix 5	AA5	A	219	225	Right-handed alpha
Helix 6	AA6	A	225	237	Right-handed alpha
Helix 7	AA7	A	246	270	Right-handed alpha
Helix 8	AA8	A	279	308	Right-handed alpha
Helix 9	AA9	A	462	487	Right-handed alpha
Helix 10	AB1	B	12	23	Right-handed alpha
Helix 11	AB2	B	174	177	Right-handed 310
Helix 12	AB3	B	224	230	Right-handed alpha
Helix 13	AB4	B	230	243	Right-handed alpha
Helix 14	AB5	B	244	247	Right-handed 310
Helix 15	AB6	B	251	273	Right-handed alpha
Helix 16	AB7	B	284	310	Right-handed alpha
Helix 17	AB8	B	390	397	Right-handed alpha
Helix 18	AB9	B	398	418	Right-handed alpha
Helix 19	AC1	C	8	20	Right-handed alpha
Helix 20	AC2	C	70	73	Right-handed 310
Helix 21	AC3	C	84	91	Right-handed 310
Helix 22	AC4	C	170	173	Right-handed 310
Helix 23	AC5	C	218	225	Right-handed alpha
Helix 24	AC6	C	225	237	Right-handed alpha
Helix 25	AC7	C	238	241	Right-handed 310
Helix 26	AC8	C	246	269	Right-handed alpha
Helix 27	AC9	C	279	308	Right-handed alpha
Helix 28	AD1	C	423	446	Right-handed alpha
Helix 29	AD2	D	11	22	Right-handed alpha
Helix 30	AD3	D	222	229	Right-handed alpha
Helix 31	AD4	D	229	241	Right-handed alpha
Helix 32	AD5	D	242	246	Right-handed 310
Helix 33	AD6	D	250	273	Right-handed alpha
Helix 34	AD7	D	285	309	Right-handed alpha
Helix 35	AD8	D	387	412	Right-handed alpha
Helix 36	AD9	E	26	35	Right-handed alpha
Helix 37	AE1	E	99	106	Right-handed 310
Helix 38	AE2	I	79	83	Right-handed 310
Helix 39	AE3	J	87	91	Right-handed 310

There are 23 sheets in PDB entry 9CTJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	83	first strand
Strand 2	A	114	118	anti-parallel
Strand 3	A	123	135	anti-parallel
Strand 4	A	56	68	anti-parallel
Strand 5	A	36	51	anti-parallel
Strand 6	A	164	167	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	106	first strand
Strand 2	A	123	135	anti-parallel
Strand 3	A	56	68	anti-parallel
Strand 4	A	36	51	anti-parallel
Strand 5	A	175	176	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	98	first strand
Strand 2	A	153	155	anti-parallel
Strand 3	A	203	214	anti-parallel
Strand 4	A	188	193	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	150	first strand
Strand 2	A	203	214	anti-parallel
Strand 3	A	196	200	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	108	109	first strand
Strand 2	B	129	138	anti-parallel
Strand 3	B	59	69	anti-parallel
Strand 4	B	39	54	anti-parallel
Strand 5	B	167	171	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	108	109	first strand
Strand 2	B	129	138	anti-parallel
Strand 3	B	59	69	anti-parallel
Strand 4	B	39	54	anti-parallel
Strand 5	B	179	181	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	86	first strand
Strand 2	B	119	122	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	152	157	first strand
Strand 2	B	209	218	anti-parallel
Strand 3	B	195	204	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	106	first strand
Strand 2	C	123	135	anti-parallel
Strand 3	C	56	68	anti-parallel
Strand 4	C	36	47	anti-parallel
Strand 5	C	164	168	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	114	118	first strand
Strand 2	C	123	135	anti-parallel
Strand 3	C	56	68	anti-parallel
Strand 4	C	36	47	anti-parallel
Strand 5	C	175	176	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	98	first strand
Strand 2	C	147	156	anti-parallel
Strand 3	C	203	216	anti-parallel
Strand 4	C	186	200	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	83	85	first strand
Strand 2	D	118	120	anti-parallel
Strand 3	D	125	137	anti-parallel
Strand 4	D	58	70	anti-parallel
Strand 5	D	38	53	anti-parallel
Strand 6	D	166	170	parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	83	85	first strand
Strand 2	D	118	120	anti-parallel
Strand 3	D	125	137	anti-parallel
Strand 4	D	58	70	anti-parallel
Strand 5	D	38	53	anti-parallel
Strand 6	D	178	180	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	99	100	first strand
Strand 2	D	156	157	anti-parallel
Strand 3	D	207	220	anti-parallel
Strand 4	D	151	152	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	99	100	first strand
Strand 2	D	156	157	anti-parallel
Strand 3	D	207	220	anti-parallel
Strand 4	D	190	204	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	95	98	first strand
Strand 2	E	129	134	anti-parallel
Strand 3	E	138	148	anti-parallel
Strand 4	E	118	121	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	95	98	first strand
Strand 2	E	129	134	anti-parallel
Strand 3	E	138	148	anti-parallel
Strand 4	E	71	83	anti-parallel
Strand 5	E	51	66	anti-parallel
Strand 6	E	179	190	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	111	113	first strand
Strand 2	E	162	171	anti-parallel
Strand 3	E	218	231	anti-parallel
Strand 4	E	201	215	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	12	first strand
Strand 2	I	102	104	parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	18	24	first strand
Strand 2	I	70	76	anti-parallel
Strand 3	I	62	65	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	53	54	first strand
Strand 2	I	45	49	anti-parallel
Strand 3	I	33	38	anti-parallel
Strand 4	I	85	90	anti-parallel
Strand 5	I	96	97	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	3	6	first strand
Strand 2	J	17	25	anti-parallel
Strand 3	J	78	84	anti-parallel
Strand 4	J	68	73	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	11	first strand
Strand 2	J	112	115	parallel
Strand 3	J	93	98	anti-parallel
Strand 4	J	34	39	anti-parallel
Strand 5	J	45	51	anti-parallel
Strand 6	J	58	60	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9CTJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9CTJ