Analysis of interatomic Contacts of Structural Units in PDB entry:
9CTM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9CTM entry

There are 4 chains in PDB entry 9CTM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 16ALA 186
A
 SER 188TYR 877
B
 PRO 16ALA 186
B
 SER 188TYR 877
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 83 helices in PDB entry 9CTM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
44 54Right-handed alpha
Helix 2
AA2
A
69 73Right-handed 310
Helix 3
AA3
A
88 92Right-handed 310
Helix 4
AA4
A
94 100Right-handed alpha
Helix 5
AA5
A
102 119Right-handed alpha
Helix 6
AA6
A
122 127Right-handed alpha
Helix 7
AA7
A
140 148Right-handed alpha
Helix 8
AA8
A
156 162Right-handed alpha
Helix 9
AA9
A
164 175Right-handed alpha
Helix 10
AB1
A
188 203Right-handed alpha
Helix 11
AB2
A
219 228Right-handed alpha
Helix 12
AB3
A
290 305Right-handed alpha
Helix 13
AB4
A
308 310Right-handed 310
Helix 14
AB5
A
325 337Right-handed alpha
Helix 15
AB6
A
350 355Right-handed alpha
Helix 16
AB7
A
357 359Right-handed 310
Helix 17
AB8
A
360 373Right-handed alpha
Helix 18
AB9
A
392 397Right-handed alpha
Helix 19
AC1
A
454 468Right-handed alpha
Helix 20
AC2
A
471 480Right-handed alpha
Helix 21
AC3
A
532 536Right-handed 310
Helix 22
AC4
A
537 552Right-handed alpha
Helix 23
AC5
A
553 555Right-handed 310
Helix 24
AC6
A
557 564Right-handed alpha
Helix 25
AC7
A
566 572Right-handed alpha
Helix 26
AC8
A
573 595Right-handed alpha
Helix 27
AC9
A
607 616Right-handed alpha
Helix 28
AD1
A
619 637Right-handed alpha
Helix 29
AD2
A
650 658Right-handed alpha
Helix 30
AD3
A
679 693Right-handed alpha
Helix 31
AD4
A
708 710Right-handed 310
Helix 32
AD5
A
711 723Right-handed alpha
Helix 33
AD6
A
741 745Right-handed 310
Helix 34
AD7
A
747 752Right-handed 310
Helix 35
AD8
A
754 764Right-handed alpha
Helix 36
AD9
A
767 774Right-handed alpha
Helix 37
AE1
A
790 799Right-handed alpha
Helix 38
AE2
A
814 829Right-handed alpha
Helix 39
AE3
A
834 839Right-handed 310
Helix 40
AE4
A
853 859Right-handed alpha
Helix 41
AE5
A
871 876Right-handed 310
Helix 42
AE6
B
44 54Right-handed alpha
Helix 43
AE7
B
69 73Right-handed 310
Helix 44
AE8
B
88 92Right-handed 310
Helix 45
AE9
B
94 100Right-handed alpha
Helix 46
AF1
B
102 119Right-handed alpha
Helix 47
AF2
B
122 127Right-handed alpha
Helix 48
AF3
B
140 148Right-handed alpha
Helix 49
AF4
B
156 161Right-handed alpha
Helix 50
AF5
B
164 175Right-handed alpha
Helix 51
AF6
B
188 203Right-handed alpha
Helix 52
AF7
B
219 229Right-handed alpha
Helix 53
AF8
B
290 305Right-handed alpha
Helix 54
AF9
B
308 310Right-handed 310
Helix 55
AG1
B
325 337Right-handed alpha
Helix 56
AG2
B
350 355Right-handed alpha
Helix 57
AG3
B
357 359Right-handed 310
Helix 58
AG4
B
360 375Right-handed alpha
Helix 59
AG5
B
391 395Right-handed 310
Helix 60
AG6
B
419 421Right-handed 310
Helix 61
AG7
B
454 468Right-handed alpha
Helix 62
AG8
B
471 480Right-handed alpha
Helix 63
AG9
B
532 536Right-handed 310
Helix 64
AH1
B
537 552Right-handed alpha
Helix 65
AH2
B
553 555Right-handed 310
Helix 66
AH3
B
557 565Right-handed alpha
Helix 67
AH4
B
566 572Right-handed alpha
Helix 68
AH5
B
573 595Right-handed alpha
Helix 69
AH6
B
607 615Right-handed alpha
Helix 70
AH7
B
619 637Right-handed alpha
Helix 71
AH8
B
650 658Right-handed alpha
Helix 72
AH9
B
679 692Right-handed alpha
Helix 73
AI1
B
708 710Right-handed 310
Helix 74
AI2
B
711 723Right-handed alpha
Helix 75
AI3
B
741 745Right-handed 310
Helix 76
AI4
B
747 752Right-handed 310
Helix 77
AI5
B
754 764Right-handed alpha
Helix 78
AI6
B
767 775Right-handed alpha
Helix 79
AI7
B
790 799Right-handed alpha
Helix 80
AI8
B
814 829Right-handed alpha
Helix 81
AI9
B
834 839Right-handed 310
Helix 82
AJ1
B
853 859Right-handed alpha
Helix 83
AJ2
B
871 876Right-handed 310
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There are 10 sheets in PDB entry 9CTM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 213first strand
Strand 2
A
131 136parallel
Strand 3
A
180 184parallel
Strand 4
B
180 183anti-parallel
Strand 5
B
131 136parallel
Strand 6
B
212 213parallel
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There are 22 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
399 401first strand
Strand 2
A
345 348parallel
Strand 3
A
312 316parallel
Strand 4
A
412 416parallel
Strand 5
A
423 431anti-parallel
Strand 6
A
269 278anti-parallel
Strand 7
A
30 36anti-parallel
Strand 8
A
255 260anti-parallel
Strand 9
A
208 209anti-parallel
Strand 10
A
131 136parallel
Strand 11
A
180 184parallel
Strand 12
B
180 183anti-parallel
Strand 13
B
131 136parallel
Strand 14
B
208 209parallel
Strand 15
B
255 260anti-parallel
Strand 16
B
30 36anti-parallel
Strand 17
B
269 278anti-parallel
Strand 18
B
423 431anti-parallel
Strand 19
B
412 416anti-parallel
Strand 20
B
312 316parallel
Strand 21
B
345 348parallel
Strand 22
B
399 401parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 61first strand
Strand 2
A
76 77anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
446 452first strand
Strand 2
A
491 497anti-parallel
Strand 3
A
504 508anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
600 603first strand
Strand 2
A
516 520parallel
Strand 3
A
780 784parallel
Strand 4
A
803 806parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
662 663first strand
Strand 2
A
676 678anti-parallel
Strand 3
A
642 646anti-parallel
Strand 4
A
697 699anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
667 669first strand
Strand 2
A
672 673anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
446 452first strand
Strand 2
B
491 497anti-parallel
Strand 3
B
504 508anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
600 603first strand
Strand 2
B
516 520parallel
Strand 3
B
780 784parallel
Strand 4
B
803 806parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
663 669first strand
Strand 2
B
672 678anti-parallel
Strand 3
B
642 645anti-parallel
Strand 4
B
698 699anti-parallel
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