Analysis of interatomic Contacts of Structural Units in PDB entry:
9CTN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9CTN entry

There are 2 chains in PDB entry 9CTN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 883	GLY 2278
B	SER 883	GLY 2278

There are117 helices in PDB entry 9CTN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	897	901	Right-handed 310
Helix 2	AA2	A	914	929	Right-handed alpha
Helix 3	AA3	A	931	935	Right-handed 310
Helix 4	AA4	A	1007	1009	Right-handed 310
Helix 5	AA5	A	1014	1024	Right-handed alpha
Helix 6	AA6	A	1052	1066	Right-handed alpha
Helix 7	AA7	A	1085	1089	Right-handed 310
Helix 8	AA8	A	1162	1187	Right-handed alpha
Helix 9	AA9	A	1194	1208	Right-handed alpha
Helix 10	AB1	A	1218	1231	Right-handed alpha
Helix 11	AB2	A	1241	1252	Right-handed alpha
Helix 12	AB3	A	1257	1267	Right-handed alpha
Helix 13	AB4	A	1269	1275	Right-handed alpha
Helix 14	AB5	A	1278	1282	Right-handed 310
Helix 15	AB6	A	1284	1299	Right-handed alpha
Helix 16	AB7	A	1316	1324	Right-handed alpha
Helix 17	AB8	A	1344	1348	Right-handed 310
Helix 18	AB9	A	1365	1369	Right-handed 310
Helix 19	AC1	A	1380	1384	Right-handed 310
Helix 20	AC2	A	1386	1396	Right-handed alpha
Helix 21	AC3	A	1416	1424	Right-handed alpha
Helix 22	AC4	A	1444	1455	Right-handed alpha
Helix 23	AC5	A	1496	1505	Right-handed alpha
Helix 24	AC6	A	1506	1510	Right-handed 310
Helix 25	AC7	A	1526	1539	Right-handed alpha
Helix 26	AC8	A	1564	1574	Right-handed alpha
Helix 27	AC9	A	1594	1600	Right-handed 310
Helix 28	AD1	A	1626	1630	Right-handed 310
Helix 29	AD2	A	1636	1641	Right-handed 310
Helix 30	AD3	A	1657	1665	Right-handed alpha
Helix 31	AD4	A	1669	1673	Right-handed 310
Helix 32	AD5	A	1674	1678	Right-handed 310
Helix 33	AD6	A	1726	1731	Right-handed alpha
Helix 34	AD7	A	1732	1745	Right-handed alpha
Helix 35	AD8	A	1763	1776	Right-handed alpha
Helix 36	AD9	A	1786	1797	Right-handed alpha
Helix 37	AE1	A	1801	1803	Right-handed 310
Helix 38	AE2	A	1812	1821	Right-handed alpha
Helix 39	AE3	A	1835	1844	Right-handed alpha
Helix 40	AE4	A	1860	1868	Right-handed alpha
Helix 41	AE5	A	1876	1885	Right-handed alpha
Helix 42	AE6	A	1886	1902	Right-handed alpha
Helix 43	AE7	A	1914	1916	Right-handed 310
Helix 44	AE8	A	1917	1928	Right-handed alpha
Helix 45	AE9	A	1976	1989	Right-handed alpha
Helix 46	AF1	A	2003	2017	Right-handed alpha
Helix 47	AF2	A	2029	2042	Right-handed alpha
Helix 48	AF3	A	2060	2064	Right-handed 310
Helix 49	AF4	A	2065	2070	Right-handed alpha
Helix 50	AF5	A	2077	2089	Right-handed alpha
Helix 51	AF6	A	2091	2096	Right-handed alpha
Helix 52	AF7	A	2106	2108	Right-handed 310
Helix 53	AF8	A	2114	2134	Right-handed alpha
Helix 54	AF9	A	2170	2183	Right-handed alpha
Helix 55	AG1	A	2207	2220	Right-handed alpha
Helix 56	AG2	A	2233	2238	Right-handed alpha
Helix 57	AG3	A	2242	2254	Right-handed alpha
Helix 58	AG4	A	2260	2266	Right-handed alpha
Helix 59	AG5	A	2268	2278	Right-handed alpha
Helix 60	AG6	B	897	901	Right-handed 310
Helix 61	AG7	B	914	928	Right-handed alpha
Helix 62	AG8	B	931	935	Right-handed 310
Helix 63	AG9	B	993	998	Right-handed 310
Helix 64	AH1	B	1007	1009	Right-handed 310
Helix 65	AH2	B	1014	1024	Right-handed alpha
Helix 66	AH3	B	1052	1067	Right-handed alpha
Helix 67	AH4	B	1162	1187	Right-handed alpha
Helix 68	AH5	B	1194	1208	Right-handed alpha
Helix 69	AH6	B	1218	1231	Right-handed alpha
Helix 70	AH7	B	1240	1249	Right-handed alpha
Helix 71	AH8	B	1258	1269	Right-handed alpha
Helix 72	AH9	B	1269	1275	Right-handed alpha
Helix 73	AI1	B	1284	1299	Right-handed alpha
Helix 74	AI2	B	1316	1324	Right-handed alpha
Helix 75	AI3	B	1325	1328	Right-handed 310
Helix 76	AI4	B	1343	1347	Right-handed 310
Helix 77	AI5	B	1365	1369	Right-handed 310
Helix 78	AI6	B	1386	1397	Right-handed alpha
Helix 79	AI7	B	1416	1420	Right-handed 310
Helix 80	AI8	B	1444	1455	Right-handed alpha
Helix 81	AI9	B	1496	1506	Right-handed alpha
Helix 82	AJ1	B	1507	1510	Right-handed 310
Helix 83	AJ2	B	1526	1539	Right-handed alpha
Helix 84	AJ3	B	1564	1574	Right-handed alpha
Helix 85	AJ4	B	1596	1600	Right-handed 310
Helix 86	AJ5	B	1626	1630	Right-handed 310
Helix 87	AJ6	B	1636	1641	Right-handed 310
Helix 88	AJ7	B	1657	1665	Right-handed alpha
Helix 89	AJ8	B	1674	1678	Right-handed 310
Helix 90	AJ9	B	1726	1731	Right-handed alpha
Helix 91	AK1	B	1733	1745	Right-handed alpha
Helix 92	AK2	B	1763	1776	Right-handed alpha
Helix 93	AK3	B	1786	1797	Right-handed alpha
Helix 94	AK4	B	1801	1803	Right-handed 310
Helix 95	AK5	B	1812	1821	Right-handed alpha
Helix 96	AK6	B	1835	1844	Right-handed alpha
Helix 97	AK7	B	1859	1868	Right-handed alpha
Helix 98	AK8	B	1876	1885	Right-handed alpha
Helix 99	AK9	B	1886	1902	Right-handed alpha
Helix 100	AL1	B	1917	1928	Right-handed alpha
Helix 101	AL2	B	1975	1989	Right-handed alpha
Helix 102	AL3	B	2003	2017	Right-handed alpha
Helix 103	AL4	B	2029	2044	Right-handed alpha
Helix 104	AL5	B	2060	2064	Right-handed 310
Helix 105	AL6	B	2065	2070	Right-handed alpha
Helix 106	AL7	B	2072	2077	Right-handed alpha
Helix 107	AL8	B	2079	2087	Right-handed alpha
Helix 108	AL9	B	2091	2096	Right-handed alpha
Helix 109	AM1	B	2105	2110	Right-handed alpha
Helix 110	AM2	B	2114	2134	Right-handed alpha
Helix 111	AM3	B	2170	2183	Right-handed alpha
Helix 112	AM4	B	2207	2220	Right-handed alpha
Helix 113	AM5	B	2224	2228	Right-handed 310
Helix 114	AM6	B	2233	2238	Right-handed alpha
Helix 115	AM7	B	2242	2255	Right-handed alpha
Helix 116	AM8	B	2260	2265	Right-handed alpha
Helix 117	AM9	B	2268	2278	Right-handed alpha

There are 27 sheets in PDB entry 9CTN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	887	891	first strand
Strand 2	A	954	958	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	903	905	first strand
Strand 2	A	1026	1028	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	961	962	first strand
Strand 2	A	968	973	anti-parallel
Strand 3	A	976	986	anti-parallel
Strand 4	A	936	943	anti-parallel
Strand 5	A	1073	1083	anti-parallel
Strand 6	A	1119	1129	anti-parallel
Strand 7	A	1113	1116	anti-parallel
Strand 8	A	1105	1108	anti-parallel
Strand 9	A	1044	1045	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1011	1013	first strand
Strand 2	A	1037	1039	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1048	1049	first strand
Strand 2	A	1101	1102	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1485	1488	first strand
Strand 2	A	1516	1520	parallel
Strand 3	A	1543	1548	parallel
Strand 4	A	1577	1581	parallel
Strand 5	A	1584	1593	anti-parallel
Strand 6	A	1139	1147	anti-parallel
Strand 7	A	2188	2194	anti-parallel
Strand 8	A	2140	2143	parallel
Strand 9	A	2103	2104	parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1485	1488	first strand
Strand 2	A	1516	1520	parallel
Strand 3	A	1543	1548	parallel
Strand 4	A	1577	1581	parallel
Strand 5	A	1584	1593	anti-parallel
Strand 6	A	1139	1147	anti-parallel
Strand 7	A	2188	2194	anti-parallel
Strand 8	A	2166	2167	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1351	1355	first strand
Strand 2	A	1332	1339	parallel
Strand 3	A	1303	1309	parallel
Strand 4	A	1372	1376	parallel
Strand 5	A	1398	1409	parallel
Strand 6	A	1469	1475	anti-parallel
Strand 7	A	1458	1464	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1602	1604	first strand
Strand 2	A	1954	1956	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1607	1611	first strand
Strand 2	A	1620	1624	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1710	1714	first strand
Strand 2	A	1646	1656	anti-parallel
Strand 3	A	1687	1691	anti-parallel
Strand 4	A	1697	1701	anti-parallel
Strand 5	A	1718	1720	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1710	1714	first strand
Strand 2	A	1646	1656	anti-parallel
Strand 3	A	1934	1937	anti-parallel
Strand 4	A	1912	1913	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1805	1807	first strand
Strand 2	A	1779	1784	parallel
Strand 3	A	1755	1758	parallel
Strand 4	A	1826	1831	parallel
Strand 5	A	1845	1853	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2019	2024	first strand
Strand 2	A	1992	1997	parallel
Strand 3	A	1967	1971	parallel
Strand 4	A	2046	2051	parallel
Strand 5	A	2099	2101	parallel

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There are 12 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	885	891	first strand
Strand 2	B	954	962	anti-parallel
Strand 3	B	968	970	anti-parallel
Strand 4	B	980	983	anti-parallel
Strand 5	B	937	943	anti-parallel
Strand 6	B	1073	1084	anti-parallel
Strand 7	B	1119	1121	anti-parallel
Strand 8	B	1113	1116	anti-parallel
Strand 9	B	1102	1108	anti-parallel
Strand 10	B	1044	1048	anti-parallel
Strand 11	B	1035	1039	anti-parallel
Strand 12	B	1011	1013	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	885	891	first strand
Strand 2	B	954	962	anti-parallel
Strand 3	B	968	970	anti-parallel
Strand 4	B	980	983	anti-parallel
Strand 5	B	937	943	anti-parallel
Strand 6	B	1073	1084	anti-parallel
Strand 7	B	1124	1129	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	908	909	first strand
Strand 2	B	903	905	anti-parallel
Strand 3	B	1026	1028	anti-parallel

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There are 9 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1485	1488	first strand
Strand 2	B	1516	1520	parallel
Strand 3	B	1543	1548	parallel
Strand 4	B	1577	1581	parallel
Strand 5	B	1584	1592	anti-parallel
Strand 6	B	1139	1147	anti-parallel
Strand 7	B	2188	2194	anti-parallel
Strand 8	B	2140	2143	parallel
Strand 9	B	2103	2104	parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1485	1488	first strand
Strand 2	B	1516	1520	parallel
Strand 3	B	1543	1548	parallel
Strand 4	B	1577	1581	parallel
Strand 5	B	1584	1592	anti-parallel
Strand 6	B	1139	1147	anti-parallel
Strand 7	B	2188	2194	anti-parallel
Strand 8	B	2166	2167	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1332	1334	first strand
Strand 2	B	1303	1309	parallel
Strand 3	B	1336	1339	parallel
Strand 4	B	1352	1355	parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1332	1334	first strand
Strand 2	B	1303	1309	parallel
Strand 3	B	1372	1378	parallel
Strand 4	B	1398	1409	parallel
Strand 5	B	1469	1475	anti-parallel
Strand 6	B	1458	1461	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1602	1604	first strand
Strand 2	B	1954	1956	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1607	1611	first strand
Strand 2	B	1620	1624	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1711	1714	first strand
Strand 2	B	1646	1656	anti-parallel
Strand 3	B	1687	1691	anti-parallel
Strand 4	B	1697	1701	anti-parallel
Strand 5	B	1718	1720	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1711	1714	first strand
Strand 2	B	1646	1656	anti-parallel
Strand 3	B	1933	1937	anti-parallel
Strand 4	B	1910	1914	parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1805	1807	first strand
Strand 2	B	1779	1784	parallel
Strand 3	B	1755	1758	parallel
Strand 4	B	1826	1831	parallel
Strand 5	B	1845	1853	parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2019	2024	first strand
Strand 2	B	1992	1997	parallel
Strand 3	B	1967	1971	parallel
Strand 4	B	2046	2051	parallel
Strand 5	B	2098	2101	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9CTN

Analysis of interatomic Contacts of Structural Units in PDB entry:
9CTN