Analysis of interatomic Contacts of Structural Units in PDB entry:
9CU0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9CU0 entry

There are 7 chains in PDB entry 9CU0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 4	GLU 480
B	SER 2	ARG 523
C	MET 4	GLU 480
D	SER 2	ARG 523
E	MET 3	GLU 276
F	ALA 2	LYS 285
G	ALA 2	ALA 122

There are130 helices in PDB entry 9CU0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	5	18	Right-handed alpha
Helix 2	AA2	A	21	29	Right-handed alpha
Helix 3	AA3	A	41	45	Right-handed 310
Helix 4	AA4	A	62	68	Right-handed alpha
Helix 5	AA5	A	86	92	Right-handed alpha
Helix 6	AA6	A	119	126	Right-handed alpha
Helix 7	AA7	A	127	142	Right-handed alpha
Helix 8	AA8	A	153	160	Right-handed alpha
Helix 9	AA9	A	162	175	Right-handed alpha
Helix 10	AB1	A	190	205	Right-handed alpha
Helix 11	AB2	A	205	210	Right-handed alpha
Helix 12	AB3	A	233	245	Right-handed alpha
Helix 13	AB4	A	258	265	Right-handed alpha
Helix 14	AB5	A	266	268	Right-handed 310
Helix 15	AB6	A	275	290	Right-handed alpha
Helix 16	AB7	A	301	314	Right-handed alpha
Helix 17	AB8	A	317	347	Right-handed alpha
Helix 18	AB9	A	358	363	Right-handed alpha
Helix 19	AC1	A	363	370	Right-handed alpha
Helix 20	AC2	A	383	392	Right-handed alpha
Helix 21	AC3	A	405	417	Right-handed alpha
Helix 22	AC4	A	424	433	Right-handed alpha
Helix 23	AC5	A	451	468	Right-handed alpha
Helix 24	AC6	A	469	474	Right-handed 310
Helix 25	AC7	B	10	15	Right-handed alpha
Helix 26	AC8	B	17	31	Right-handed alpha
Helix 27	AC9	B	36	49	Right-handed alpha
Helix 28	AD1	B	49	58	Right-handed alpha
Helix 29	AD2	B	70	80	Right-handed alpha
Helix 30	AD3	B	92	108	Right-handed alpha
Helix 31	AD4	B	119	126	Right-handed alpha
Helix 32	AD5	B	127	143	Right-handed alpha
Helix 33	AD6	B	152	158	Right-handed alpha
Helix 34	AD7	B	162	172	Right-handed alpha
Helix 35	AD8	B	192	209	Right-handed alpha
Helix 36	AD9	B	233	247	Right-handed alpha
Helix 37	AE1	B	277	283	Right-handed alpha
Helix 38	AE2	B	284	287	Right-handed 310
Helix 39	AE3	B	294	297	Right-handed 310
Helix 40	AE4	B	298	308	Right-handed alpha
Helix 41	AE5	B	322	337	Right-handed alpha
Helix 42	AE6	B	341	363	Right-handed alpha
Helix 43	AE7	B	372	386	Right-handed alpha
Helix 44	AE8	B	399	412	Right-handed alpha
Helix 45	AE9	B	426	437	Right-handed alpha
Helix 46	AF1	B	445	447	Right-handed 310
Helix 47	AF2	B	448	459	Right-handed alpha
Helix 48	AF3	B	478	482	Right-handed 310
Helix 49	AF4	B	485	509	Right-handed alpha
Helix 50	AF5	B	515	519	Right-handed 310
Helix 51	AF6	C	5	20	Right-handed alpha
Helix 52	AF7	C	21	30	Right-handed alpha
Helix 53	AF8	C	41	45	Right-handed 310
Helix 54	AF9	C	62	68	Right-handed alpha
Helix 55	AG1	C	85	92	Right-handed alpha
Helix 56	AG2	C	119	126	Right-handed alpha
Helix 57	AG3	C	127	142	Right-handed alpha
Helix 58	AG4	C	153	159	Right-handed alpha
Helix 59	AG5	C	163	175	Right-handed alpha
Helix 60	AG6	C	190	206	Right-handed alpha
Helix 61	AG7	C	233	245	Right-handed alpha
Helix 62	AG8	C	258	265	Right-handed alpha
Helix 63	AG9	C	266	268	Right-handed 310
Helix 64	AH1	C	275	291	Right-handed alpha
Helix 65	AH2	C	301	315	Right-handed alpha
Helix 66	AH3	C	317	343	Right-handed alpha
Helix 67	AH4	C	344	346	Right-handed 310
Helix 68	AH5	C	358	363	Right-handed alpha
Helix 69	AH6	C	363	370	Right-handed alpha
Helix 70	AH7	C	383	394	Right-handed alpha
Helix 71	AH8	C	405	417	Right-handed alpha
Helix 72	AH9	C	424	432	Right-handed alpha
Helix 73	AI1	C	443	447	Right-handed 310
Helix 74	AI2	C	451	468	Right-handed alpha
Helix 75	AI3	C	472	476	Right-handed 310
Helix 76	AI4	D	10	15	Right-handed alpha
Helix 77	AI5	D	17	31	Right-handed alpha
Helix 78	AI6	D	36	47	Right-handed alpha
Helix 79	AI7	D	49	58	Right-handed alpha
Helix 80	AI8	D	71	80	Right-handed alpha
Helix 81	AI9	D	92	108	Right-handed alpha
Helix 82	AJ1	D	119	126	Right-handed alpha
Helix 83	AJ2	D	127	143	Right-handed alpha
Helix 84	AJ3	D	152	158	Right-handed alpha
Helix 85	AJ4	D	161	172	Right-handed alpha
Helix 86	AJ5	D	192	209	Right-handed alpha
Helix 87	AJ6	D	233	248	Right-handed alpha
Helix 88	AJ7	D	257	262	Right-handed alpha
Helix 89	AJ8	D	277	283	Right-handed alpha
Helix 90	AJ9	D	284	287	Right-handed 310
Helix 91	AK1	D	298	309	Right-handed alpha
Helix 92	AK2	D	322	337	Right-handed alpha
Helix 93	AK3	D	341	363	Right-handed alpha
Helix 94	AK4	D	372	386	Right-handed alpha
Helix 95	AK5	D	399	412	Right-handed alpha
Helix 96	AK6	D	426	437	Right-handed alpha
Helix 97	AK7	D	445	447	Right-handed 310
Helix 98	AK8	D	448	459	Right-handed alpha
Helix 99	AK9	D	478	482	Right-handed 310
Helix 100	AL1	D	485	509	Right-handed alpha
Helix 101	AL2	D	515	519	Right-handed 310
Helix 102	AL3	E	15	30	Right-handed alpha
Helix 103	AL4	E	46	51	Right-handed alpha
Helix 104	AL5	E	57	65	Right-handed alpha
Helix 105	AL6	E	67	71	Right-handed 310
Helix 106	AL7	E	72	77	Right-handed alpha
Helix 107	AL8	E	100	114	Right-handed alpha
Helix 108	AL9	E	137	142	Right-handed alpha
Helix 109	AM1	E	155	172	Right-handed alpha
Helix 110	AM2	E	193	205	Right-handed alpha
Helix 111	AM3	E	216	225	Right-handed alpha
Helix 112	AM4	E	227	232	Right-handed alpha
Helix 113	AM5	E	235	250	Right-handed alpha
Helix 114	AM6	E	261	272	Right-handed alpha
Helix 115	AM7	F	15	31	Right-handed alpha
Helix 116	AM8	F	46	51	Right-handed alpha
Helix 117	AM9	F	57	66	Right-handed alpha
Helix 118	AN1	F	72	77	Right-handed alpha
Helix 119	AN2	F	100	114	Right-handed alpha
Helix 120	AN3	F	137	142	Right-handed alpha
Helix 121	AN4	F	155	172	Right-handed alpha
Helix 122	AN5	F	192	204	Right-handed alpha
Helix 123	AN6	F	216	224	Right-handed alpha
Helix 124	AN7	F	227	232	Right-handed alpha
Helix 125	AN8	F	235	250	Right-handed alpha
Helix 126	AN9	F	261	272	Right-handed alpha
Helix 127	AO1	F	279	283	Right-handed 310
Helix 128	AO2	G	26	34	Right-handed alpha
Helix 129	AO3	G	68	79	Right-handed alpha
Helix 130	AO4	G	82	92	Right-handed alpha

There are 15 sheets in PDB entry 9CU0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	34	first strand
Strand 2	A	399	402	anti-parallel
Strand 3	A	373	379	parallel
Strand 4	A	350	353	parallel
Strand 5	A	420	423	parallel
Strand 6	A	438	440	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	178	182	first strand
Strand 2	A	147	152	parallel
Strand 3	A	78	83	parallel
Strand 4	A	114	115	parallel
Strand 5	B	63	64	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	248	254	first strand
Strand 2	A	222	228	parallel
Strand 3	A	270	273	parallel
Strand 4	A	294	296	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	114	115	first strand
Strand 2	B	85	90	parallel
Strand 3	B	146	151	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	251	253	first strand
Strand 2	B	224	227	parallel
Strand 3	B	289	292	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	420	423	first strand
Strand 2	B	389	395	parallel
Strand 3	B	366	370	parallel
Strand 4	B	441	444	parallel
Strand 5	B	466	468	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	34	first strand
Strand 2	C	399	402	anti-parallel
Strand 3	C	373	379	parallel
Strand 4	C	350	354	parallel
Strand 5	C	420	422	parallel
Strand 6	C	438	439	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	178	181	first strand
Strand 2	C	148	152	parallel
Strand 3	C	79	83	parallel
Strand 4	C	114	115	parallel
Strand 5	D	63	64	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	248	254	first strand
Strand 2	C	222	228	parallel
Strand 3	C	270	273	parallel
Strand 4	C	294	296	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	114	115	first strand
Strand 2	D	85	90	parallel
Strand 3	D	146	151	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	250	253	first strand
Strand 2	D	223	227	parallel
Strand 3	D	290	292	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	420	423	first strand
Strand 2	D	389	395	parallel
Strand 3	D	366	370	parallel
Strand 4	D	441	444	parallel
Strand 5	D	466	468	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	85	88	first strand
Strand 2	E	34	38	parallel
Strand 3	E	122	128	parallel
Strand 4	E	4	10	parallel
Strand 5	E	147	152	parallel
Strand 6	E	179	186	parallel
Strand 7	E	208	212	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	78	80	first strand
Strand 2	F	84	88	anti-parallel
Strand 3	F	34	39	parallel
Strand 4	F	122	127	parallel
Strand 5	F	4	9	parallel
Strand 6	F	147	151	parallel
Strand 7	F	179	186	parallel
Strand 8	F	208	212	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	15	18	first strand
Strand 2	G	3	7	anti-parallel
Strand 3	G	110	114	parallel
Strand 4	G	51	56	anti-parallel
Strand 5	G	98	100	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9CU0

Analysis of interatomic Contacts of Structural Units in PDB entry:
9CU0