Analysis of interatomic Contacts of Structural Units in PDB entry:
9CU5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9CU5 entry

There are 13 chains in PDB entry 9CU5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	GLY 2	SER 112
E	SER 2	SER 110
F	GLY 2	VAL 111
G	SER 2	SER 110
J	GLY 2	SER 112
K	SER 2	SER 110
H	GLN 1	VAL 111
L	ASP 1	MET 106
I	GLN 1	VAL 111
M	ASP 1	MET 106
C	GLU 32	LEU 663
B	GLU 32	LEU 663
A	GLU 32	LEU 663

There are 50 helices in PDB entry 9CU5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	28	32	Right-handed 310
Helix 2	AA2	D	61	64	Right-handed 310
Helix 3	AA3	D	83	86	Right-handed 310
Helix 4	AA4	E	27	31	Right-handed 310
Helix 5	AA5	E	79	83	Right-handed 310
Helix 6	AA6	F	61	64	Right-handed 310
Helix 7	AA7	G	79	83	Right-handed 310
Helix 8	AA8	J	61	64	Right-handed 310
Helix 9	AA9	J	83	86	Right-handed 310
Helix 10	AB1	K	26	27	Right-handed 310
Helix 11	AB2	H	83	87	Right-handed 310
Helix 12	AB3	L	79	83	Right-handed 310
Helix 13	AB4	I	83	87	Right-handed 310
Helix 14	AB5	M	79	83	Right-handed 310
Helix 15	AB6	C	70	74	Right-handed 310
Helix 16	AB7	C	98	117	Right-handed alpha
Helix 17	AB8	C	122	126	Right-handed 310
Helix 18	AB9	C	335	353	Right-handed alpha
Helix 19	AC1	C	368	373	Right-handed alpha
Helix 20	AC2	C	377	381	Right-handed 310
Helix 21	AC3	C	425	429	Right-handed 310
Helix 22	AC4	C	475	481	Right-handed alpha
Helix 23	AC5	C	529	536	Right-handed alpha
Helix 24	AC6	C	536	543	Right-handed alpha
Helix 25	AC7	C	569	596	Right-handed alpha
Helix 26	AC8	C	618	624	Right-handed alpha
Helix 27	AC9	C	627	635	Right-handed alpha
Helix 28	AD1	C	635	649	Right-handed alpha
Helix 29	AD2	C	649	661	Right-handed alpha
Helix 30	AD3	B	98	116	Right-handed alpha
Helix 31	AD4	B	122	126	Right-handed 310
Helix 32	AD5	B	335	354	Right-handed alpha
Helix 33	AD6	B	368	373	Right-handed alpha
Helix 34	AD7	B	476	481	Right-handed alpha
Helix 35	AD8	B	536	545	Right-handed alpha
Helix 36	AD9	B	569	596	Right-handed alpha
Helix 37	AE1	B	618	623	Right-handed alpha
Helix 38	AE2	B	627	635	Right-handed alpha
Helix 39	AE3	B	638	649	Right-handed alpha
Helix 40	AE4	B	650	660	Right-handed alpha
Helix 41	AE5	A	98	117	Right-handed alpha
Helix 42	AE6	A	123	127	Right-handed 310
Helix 43	AE7	A	334	353	Right-handed alpha
Helix 44	AE8	A	368	373	Right-handed alpha
Helix 45	AE9	A	474	481	Right-handed alpha
Helix 46	AF1	A	529	534	Right-handed alpha
Helix 47	AF2	A	572	596	Right-handed alpha
Helix 48	AF3	A	618	623	Right-handed alpha
Helix 49	AF4	A	627	636	Right-handed alpha
Helix 50	AF5	A	638	656	Right-handed alpha

There are 56 sheets in PDB entry 9CU5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1, AG2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	6	first strand
Strand 2	D	18	25	anti-parallel
Strand 3	D	74	82	anti-parallel
Strand 4	D	67	71	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	6	first strand
Strand 2	D	18	25	anti-parallel
Strand 3	D	74	82	anti-parallel
Strand 4	D	73	73	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	57	59	first strand
Strand 2	D	46	51	anti-parallel
Strand 3	D	34	40	anti-parallel
Strand 4	D	88	94	anti-parallel
Strand 5	D	107	109	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	6	first strand
Strand 2	E	19	24	anti-parallel
Strand 3	E	71	75	anti-parallel
Strand 4	E	62	66	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	14	first strand
Strand 2	E	102	107	parallel
Strand 3	E	85	91	anti-parallel
Strand 4	E	32	37	anti-parallel
Strand 5	E	45	46	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	14	first strand
Strand 2	E	102	107	parallel
Strand 3	E	85	91	anti-parallel
Strand 4	E	97	98	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	5	6	first strand
Strand 2	F	18	23	anti-parallel
Strand 3	F	77	82	anti-parallel
Strand 4	F	67	71	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	57	59	first strand
Strand 2	F	44	51	anti-parallel
Strand 3	F	34	40	anti-parallel
Strand 4	F	88	95	anti-parallel
Strand 5	F	100	103	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	57	59	first strand
Strand 2	F	44	51	anti-parallel
Strand 3	F	34	40	anti-parallel
Strand 4	F	88	95	anti-parallel
Strand 5	F	107	108	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	73	73	first strand
Strand 2	F	73	75	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	5	6	first strand
Strand 2	G	19	24	anti-parallel
Strand 3	G	70	75	anti-parallel
Strand 4	G	64	66	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	11	14	first strand
Strand 2	G	102	107	parallel
Strand 3	G	85	91	anti-parallel
Strand 4	G	32	37	anti-parallel
Strand 5	G	45	48	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	11	14	first strand
Strand 2	G	102	107	parallel
Strand 3	G	85	91	anti-parallel
Strand 4	G	97	98	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	3	6	first strand
Strand 2	J	17	27	anti-parallel
Strand 3	J	74	82	anti-parallel
Strand 4	J	67	71	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	3	6	first strand
Strand 2	J	17	27	anti-parallel
Strand 3	J	74	82	anti-parallel
Strand 4	J	73	73	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	12	first strand
Strand 2	J	107	111	parallel
Strand 3	J	88	95	anti-parallel
Strand 4	J	34	40	anti-parallel
Strand 5	J	45	52	anti-parallel
Strand 6	J	56	59	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	12	first strand
Strand 2	J	107	111	parallel
Strand 3	J	88	95	anti-parallel
Strand 4	J	100	103	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	5	6	first strand
Strand 2	K	21	24	anti-parallel
Strand 3	K	71	75	anti-parallel
Strand 4	K	62	66	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	9	13	first strand
Strand 2	K	102	106	parallel
Strand 3	K	85	91	anti-parallel
Strand 4	K	32	38	anti-parallel
Strand 5	K	45	48	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	9	13	first strand
Strand 2	K	102	106	parallel
Strand 3	K	85	91	anti-parallel
Strand 4	K	96	98	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	7	first strand
Strand 2	H	18	24	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	70	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	57	59	first strand
Strand 2	H	46	52	anti-parallel
Strand 3	H	33	39	anti-parallel
Strand 4	H	88	95	anti-parallel
Strand 5	H	100	103	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	57	59	first strand
Strand 2	H	46	52	anti-parallel
Strand 3	H	33	39	anti-parallel
Strand 4	H	88	95	anti-parallel
Strand 5	H	107	109	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	12	first strand
Strand 2	L	102	105	parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	45	48	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	3	7	first strand
Strand 2	I	18	25	anti-parallel
Strand 3	I	77	82	anti-parallel
Strand 4	I	67	73	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	57	59	first strand
Strand 2	I	46	52	anti-parallel
Strand 3	I	33	39	anti-parallel
Strand 4	I	88	95	anti-parallel
Strand 5	I	100	103	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	57	59	first strand
Strand 2	I	46	52	anti-parallel
Strand 3	I	33	39	anti-parallel
Strand 4	I	88	95	anti-parallel
Strand 5	I	107	109	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	4	7	first strand
Strand 2	M	19	25	anti-parallel
Strand 3	M	70	75	anti-parallel
Strand 4	M	62	67	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	10	12	first strand
Strand 2	M	102	105	parallel
Strand 3	M	85	90	anti-parallel
Strand 4	M	33	38	anti-parallel
Strand 5	M	45	49	anti-parallel
Strand 6	M	53	54	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	494	499	first strand
Strand 2	C	35	40	anti-parallel
Strand 3	C	603	609	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	47	first strand
Strand 2	C	486	491	anti-parallel
Strand 3	C	223	228	anti-parallel
Strand 4	C	242	245	anti-parallel
Strand 5	C	83	86	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	75	76	first strand
Strand 2	C	53	56	parallel
Strand 3	C	216	218	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	91	94	first strand
Strand 2	C	236	239	anti-parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	177	first strand
Strand 2	C	154	162	anti-parallel
Strand 3	C	129	131	anti-parallel
Strand 4	C	190	193	anti-parallel
Strand 5	C	181	183	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	200	203	first strand
Strand 2	C	432	435	parallel
Strand 3	C	423	424	anti-parallel

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There are 7 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	259	261	first strand
Strand 2	C	443	456	anti-parallel
Strand 3	C	284	298	anti-parallel
Strand 4	C	329	334	anti-parallel
Strand 5	C	413	421	anti-parallel
Strand 6	C	382	385	anti-parallel
Strand 7	C	374	376	anti-parallel

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There are 6 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	271	273	first strand
Strand 2	C	284	298	anti-parallel
Strand 3	C	443	456	anti-parallel
Strand 4	C	465	470	anti-parallel
Strand 5	C	357	361	parallel
Strand 6	C	393	394	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	301	312	first strand
Strand 2	C	315	323	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	494	499	first strand
Strand 2	B	35	40	anti-parallel
Strand 3	B	603	609	anti-parallel

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There are 5 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	47	first strand
Strand 2	B	486	491	anti-parallel
Strand 3	B	223	228	anti-parallel
Strand 4	B	242	245	anti-parallel
Strand 5	B	83	84	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	76	first strand
Strand 2	B	53	56	parallel
Strand 3	B	215	218	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	94	first strand
Strand 2	B	236	238	anti-parallel

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There are 5 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	170	177	first strand
Strand 2	B	154	161	anti-parallel
Strand 3	B	129	133	anti-parallel
Strand 4	B	190	193	anti-parallel
Strand 5	B	181	183	anti-parallel

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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	200	203	first strand
Strand 2	B	432	435	parallel
Strand 3	B	423	424	anti-parallel

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There are 3 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	259	261	first strand
Strand 2	B	443	456	anti-parallel
Strand 3	B	293	298	anti-parallel

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There are 6 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	271	273	first strand
Strand 2	B	284	287	anti-parallel
Strand 3	B	443	456	anti-parallel
Strand 4	B	465	470	anti-parallel
Strand 5	B	357	361	parallel
Strand 6	B	393	394	anti-parallel

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There are 2 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	301	312	first strand
Strand 2	B	315	323	anti-parallel

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There are 3 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	329	334	first strand
Strand 2	B	413	421	anti-parallel
Strand 3	B	382	385	anti-parallel

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There are 3 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	494	499	first strand
Strand 2	A	35	40	anti-parallel
Strand 3	A	603	609	anti-parallel

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There are 5 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	47	first strand
Strand 2	A	487	491	anti-parallel
Strand 3	A	223	228	anti-parallel
Strand 4	A	242	245	anti-parallel
Strand 5	A	84	85	anti-parallel

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There are 2 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	94	first strand
Strand 2	A	236	239	anti-parallel

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There are 5 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	172	177	first strand
Strand 2	A	154	159	anti-parallel
Strand 3	A	129	132	anti-parallel
Strand 4	A	190	193	anti-parallel
Strand 5	A	181	183	anti-parallel

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There are 3 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	200	203	first strand
Strand 2	A	432	435	parallel
Strand 3	A	423	424	anti-parallel

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There are 6 strands in AG1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	261	first strand
Strand 2	A	447	456	anti-parallel
Strand 3	A	284	297	anti-parallel
Strand 4	A	465	470	first strand
Strand 5	A	357	361	parallel
Strand 6	A	393	395	anti-parallel

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There are 5 strands in AG2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	273	first strand
Strand 2	A	284	297	anti-parallel
Strand 3	A	447	456	anti-parallel
Strand 4	A	329	332	first strand
Strand 5	A	416	418	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9CU5

Analysis of interatomic Contacts of Structural Units in PDB entry:
9CU5