Analysis of interatomic Contacts of Structural Units in PDB entry:
9CV6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9CV6 entry

There are 2 chains in PDB entry 9CV6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 1622	LEU 2396
B	ASP 1622	LEU 2396

There are 65 helices in PDB entry 9CV6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1624	1635	Right-handed alpha
Helix 2	AA2	A	1638	1640	Right-handed 310
Helix 3	AA3	A	1641	1661	Right-handed alpha
Helix 4	AA4	A	1728	1732	Right-handed 310
Helix 5	AA5	A	1734	1751	Right-handed alpha
Helix 6	AA6	A	1769	1774	Right-handed alpha
Helix 7	AA7	A	1796	1804	Right-handed alpha
Helix 8	AA8	A	1835	1856	Right-handed alpha
Helix 9	AA9	A	1868	1878	Right-handed alpha
Helix 10	AB1	A	1892	1901	Right-handed alpha
Helix 11	AB2	A	1907	1913	Right-handed alpha
Helix 12	AB3	A	1913	1921	Right-handed alpha
Helix 13	AB4	A	1929	1944	Right-handed alpha
Helix 14	AB5	A	1975	1981	Right-handed alpha
Helix 15	AB6	A	2054	2071	Right-handed alpha
Helix 16	AB7	A	2087	2093	Right-handed alpha
Helix 17	AB8	A	2094	2108	Right-handed alpha
Helix 18	AB9	A	2125	2132	Right-handed alpha
Helix 19	AC1	A	2133	2136	Right-handed 310
Helix 20	AC2	A	2154	2163	Right-handed alpha
Helix 21	AC3	A	2164	2176	Right-handed alpha
Helix 22	AC4	A	2176	2196	Right-handed alpha
Helix 23	AC5	A	2220	2235	Right-handed alpha
Helix 24	AC6	A	2238	2244	Right-handed alpha
Helix 25	AC7	A	2244	2258	Right-handed alpha
Helix 26	AC8	A	2261	2268	Right-handed alpha
Helix 27	AC9	A	2279	2305	Right-handed alpha
Helix 28	AD1	A	2312	2328	Right-handed alpha
Helix 29	AD2	A	2334	2339	Right-handed alpha
Helix 30	AD3	A	2341	2353	Right-handed alpha
Helix 31	AD4	A	2356	2380	Right-handed alpha
Helix 32	AD5	A	2382	2396	Right-handed alpha
Helix 33	AD6	B	1624	1635	Right-handed alpha
Helix 34	AD7	B	1638	1640	Right-handed 310
Helix 35	AD8	B	1641	1661	Right-handed alpha
Helix 36	AD9	B	1728	1732	Right-handed 310
Helix 37	AE1	B	1734	1751	Right-handed alpha
Helix 38	AE2	B	1769	1776	Right-handed alpha
Helix 39	AE3	B	1796	1804	Right-handed alpha
Helix 40	AE4	B	1835	1856	Right-handed alpha
Helix 41	AE5	B	1868	1878	Right-handed alpha
Helix 42	AE6	B	1892	1901	Right-handed alpha
Helix 43	AE7	B	1908	1913	Right-handed alpha
Helix 44	AE8	B	1913	1921	Right-handed alpha
Helix 45	AE9	B	1929	1944	Right-handed alpha
Helix 46	AF1	B	1975	1981	Right-handed alpha
Helix 47	AF2	B	2054	2071	Right-handed alpha
Helix 48	AF3	B	2087	2093	Right-handed alpha
Helix 49	AF4	B	2094	2108	Right-handed alpha
Helix 50	AF5	B	2125	2132	Right-handed alpha
Helix 51	AF6	B	2133	2136	Right-handed 310
Helix 52	AF7	B	2154	2163	Right-handed alpha
Helix 53	AF8	B	2164	2176	Right-handed alpha
Helix 54	AF9	B	2176	2196	Right-handed alpha
Helix 55	AG1	B	2217	2219	Right-handed 310
Helix 56	AG2	B	2220	2235	Right-handed alpha
Helix 57	AG3	B	2238	2244	Right-handed alpha
Helix 58	AG4	B	2244	2258	Right-handed alpha
Helix 59	AG5	B	2261	2268	Right-handed alpha
Helix 60	AG6	B	2279	2306	Right-handed alpha
Helix 61	AG7	B	2312	2328	Right-handed alpha
Helix 62	AG8	B	2333	2337	Right-handed 310
Helix 63	AG9	B	2339	2353	Right-handed alpha
Helix 64	AH1	B	2356	2380	Right-handed alpha
Helix 65	AH2	B	2382	2396	Right-handed alpha

There are 14 sheets in PDB entry 9CV6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1687	1690	first strand
Strand 2	A	1672	1679	anti-parallel
Strand 3	A	1701	1708	anti-parallel
Strand 4	A	1718	1724	anti-parallel
Strand 5	A	1755	1759	parallel
Strand 6	A	1858	1862	parallel
Strand 7	A	1880	1883	parallel
Strand 8	A	1925	1927	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1777	1780	first strand
Strand 2	A	1790	1795	anti-parallel
Strand 3	A	1819	1827	anti-parallel
Strand 4	A	1809	1816	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1866	1867	first strand
Strand 2	A	1888	1889	parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1996	1997	first strand
Strand 2	A	2006	2013	anti-parallel
Strand 3	A	2016	2023	anti-parallel
Strand 4	A	2075	2078	parallel
Strand 5	A	2113	2117	parallel
Strand 6	A	2140	2144	parallel
Strand 7	A	2273	2274	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2028	2032	first strand
Strand 2	A	2044	2048	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2052	2053	first strand
Strand 2	A	2083	2084	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2122	2124	first strand
Strand 2	A	2149	2151	parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1687	1690	first strand
Strand 2	B	1672	1679	anti-parallel
Strand 3	B	1701	1708	anti-parallel
Strand 4	B	1718	1724	anti-parallel
Strand 5	B	1755	1759	parallel
Strand 6	B	1858	1862	parallel
Strand 7	B	1880	1883	parallel
Strand 8	B	1925	1927	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1777	1780	first strand
Strand 2	B	1790	1795	anti-parallel
Strand 3	B	1819	1827	anti-parallel
Strand 4	B	1809	1816	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1866	1867	first strand
Strand 2	B	1888	1889	parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1996	1997	first strand
Strand 2	B	2006	2013	anti-parallel
Strand 3	B	2016	2023	anti-parallel
Strand 4	B	2075	2078	parallel
Strand 5	B	2113	2117	parallel
Strand 6	B	2140	2144	parallel
Strand 7	B	2273	2274	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2028	2032	first strand
Strand 2	B	2044	2048	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2052	2053	first strand
Strand 2	B	2083	2084	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2122	2124	first strand
Strand 2	B	2149	2151	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9CV6

Analysis of interatomic Contacts of Structural Units in PDB entry:
9CV6