Analysis of interatomic Contacts of Structural Units in PDB entry:
9CV7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9CV7 entry

There are 5 chains in PDB entry 9CV7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	MET 31	LEU 663
H	VAL 2	VAL 111
L	ASP 1	MET 106
C	GLY 32	LEU 663
D	SER 33	ASP 659

There are 40 helices in PDB entry 9CV7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	59	65	Right-handed alpha
Helix 2	AA2	B	98	117	Right-handed alpha
Helix 3	AA3	B	123	126	Right-handed 310
Helix 4	AA4	B	195	197	Right-handed 310
Helix 5	AA5	B	334	350	Right-handed alpha
Helix 6	AA6	B	368	373	Right-handed alpha
Helix 7	AA7	B	387	392	Right-handed alpha
Helix 8	AA8	B	425	429	Right-handed 310
Helix 9	AA9	B	474	483	Right-handed alpha
Helix 10	AB1	B	529	536	Right-handed alpha
Helix 11	AB2	B	536	546	Right-handed alpha
Helix 12	AB3	B	571	597	Right-handed alpha
Helix 13	AB4	B	618	625	Right-handed alpha
Helix 14	AB5	B	627	636	Right-handed alpha
Helix 15	AB6	B	638	662	Right-handed alpha
Helix 16	AB7	H	61	64	Right-handed 310
Helix 17	AB8	H	83	87	Right-handed 310
Helix 18	AB9	L	79	83	Right-handed 310
Helix 19	AC1	C	98	117	Right-handed alpha
Helix 20	AC2	C	122	126	Right-handed 310
Helix 21	AC3	C	334	353	Right-handed alpha
Helix 22	AC4	C	368	373	Right-handed alpha
Helix 23	AC5	C	474	483	Right-handed alpha
Helix 24	AC6	C	529	534	Right-handed alpha
Helix 25	AC7	C	536	544	Right-handed alpha
Helix 26	AC8	C	571	597	Right-handed alpha
Helix 27	AC9	C	611	615	Right-handed 310
Helix 28	AD1	C	620	626	Right-handed alpha
Helix 29	AD2	C	627	636	Right-handed alpha
Helix 30	AD3	C	638	662	Right-handed alpha
Helix 31	AD4	D	98	117	Right-handed alpha
Helix 32	AD5	D	122	126	Right-handed 310
Helix 33	AD6	D	334	353	Right-handed alpha
Helix 34	AD7	D	387	392	Right-handed alpha
Helix 35	AD8	D	425	429	Right-handed 310
Helix 36	AD9	D	474	484	Right-handed alpha
Helix 37	AE1	D	529	534	Right-handed alpha
Helix 38	AE2	D	536	545	Right-handed alpha
Helix 39	AE3	D	572	596	Right-handed alpha
Helix 40	AE4	D	627	659	Right-handed alpha

There are 33 sheets in PDB entry 9CV7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	494	498	first strand
Strand 2	B	35	40	anti-parallel
Strand 3	B	603	609	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	46	first strand
Strand 2	B	487	491	anti-parallel
Strand 3	B	223	228	anti-parallel
Strand 4	B	242	245	anti-parallel
Strand 5	B	83	85	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	56	first strand
Strand 2	B	75	76	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	91	94	first strand
Strand 2	B	236	239	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	121	122	first strand
Strand 2	B	201	203	anti-parallel
Strand 3	B	434	435	parallel
Strand 4	B	423	424	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	177	first strand
Strand 2	B	150	162	anti-parallel
Strand 3	B	129	135	anti-parallel
Strand 4	B	190	193	anti-parallel
Strand 5	B	181	183	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	259	261	first strand
Strand 2	B	443	455	anti-parallel
Strand 3	B	284	298	anti-parallel
Strand 4	B	329	333	anti-parallel
Strand 5	B	417	420	anti-parallel
Strand 6	B	381	385	anti-parallel
Strand 7	B	374	378	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	271	274	first strand
Strand 2	B	284	298	anti-parallel
Strand 3	B	443	455	anti-parallel
Strand 4	B	469	470	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	304	312	first strand
Strand 2	B	315	320	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	7	first strand
Strand 2	H	18	24	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	73	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	46	47	first strand
Strand 2	H	33	38	anti-parallel
Strand 3	H	92	95	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	49	51	first strand
Strand 2	H	57	59	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	88	90	first strand
Strand 2	H	107	109	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	18	20	first strand
Strand 2	L	72	75	anti-parallel
Strand 3	L	62	65	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	36	38	first strand
Strand 2	L	44	46	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	85	86	first strand
Strand 2	L	102	103	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	39	first strand
Strand 2	C	495	499	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	46	first strand
Strand 2	C	487	491	anti-parallel
Strand 3	C	223	228	anti-parallel
Strand 4	C	242	245	anti-parallel
Strand 5	C	83	85	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	91	93	first strand
Strand 2	C	237	239	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	172	177	first strand
Strand 2	C	150	159	anti-parallel
Strand 3	C	129	135	anti-parallel
Strand 4	C	190	192	anti-parallel
Strand 5	C	182	183	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	200	201	first strand
Strand 2	C	432	435	parallel
Strand 3	C	423	424	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	259	260	first strand
Strand 2	C	451	455	anti-parallel
Strand 3	C	283	287	anti-parallel
Strand 4	C	271	274	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	259	260	first strand
Strand 2	C	451	455	anti-parallel
Strand 3	C	469	470	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	374	378	first strand
Strand 2	C	381	385	anti-parallel
Strand 3	C	414	420	anti-parallel
Strand 4	C	330	333	anti-parallel
Strand 5	C	294	298	anti-parallel
Strand 6	C	443	447	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	301	302	first strand
Strand 2	C	323	323	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	305	312	first strand
Strand 2	C	315	319	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	495	496	first strand
Strand 2	D	35	39	anti-parallel
Strand 3	D	603	609	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	84	85	first strand
Strand 2	D	242	245	anti-parallel
Strand 3	D	223	228	anti-parallel
Strand 4	D	486	490	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	169	177	first strand
Strand 2	D	150	162	anti-parallel
Strand 3	D	129	135	anti-parallel
Strand 4	D	190	193	anti-parallel
Strand 5	D	181	183	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	201	203	first strand
Strand 2	D	433	435	parallel
Strand 3	D	423	424	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	271	274	first strand
Strand 2	D	284	297	anti-parallel
Strand 3	D	444	454	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	301	312	first strand
Strand 2	D	315	323	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	329	332	first strand
Strand 2	D	415	420	anti-parallel
Strand 3	D	381	385	anti-parallel
Strand 4	D	374	378	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9CV7

Analysis of interatomic Contacts of Structural Units in PDB entry:
9CV7