Analysis of interatomic Contacts of Structural Units in PDB entry:
9CVC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9CVC entry

There are 5 chains in PDB entry 9CVC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2THR 832
B
 MET 1GLY 818
C
 MET 1ASN 156
D
 MET 1ASN 156
E
 MET 1ASN 156
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 65 helices in PDB entry 9CVC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 10Right-handed alpha
Helix 2
AA2
A
14 23Right-handed alpha
Helix 3
AA3
A
32 43Right-handed alpha
Helix 4
AA4
A
44 46Right-handed 310
Helix 5
AA5
A
48 62Right-handed alpha
Helix 6
AA6
A
206 210Right-handed 310
Helix 7
AA7
A
298 315Right-handed alpha
Helix 8
AA8
A
320 333Right-handed alpha
Helix 9
AA9
A
362 377Right-handed alpha
Helix 10
AB1
A
378 383Right-handed alpha
Helix 11
AB2
A
385 395Right-handed alpha
Helix 12
AB3
A
395 402Right-handed alpha
Helix 13
AB4
A
402 419Right-handed alpha
Helix 14
AB5
A
446 469Right-handed alpha
Helix 15
AB6
A
476 495Right-handed alpha
Helix 16
AB7
A
497 514Right-handed alpha
Helix 17
AB8
A
536 550Right-handed alpha
Helix 18
AB9
A
566 579Right-handed alpha
Helix 19
AC1
A
580 600Right-handed alpha
Helix 20
AC2
A
615 645Right-handed alpha
Helix 21
AC3
A
660 668Right-handed alpha
Helix 22
AC4
A
675 686Right-handed alpha
Helix 23
AC5
A
688 701Right-handed alpha
Helix 24
AC6
A
710 726Right-handed alpha
Helix 25
AC7
A
738 754Right-handed alpha
Helix 26
AC8
A
759 764Right-handed alpha
Helix 27
AC9
A
791 799Right-handed alpha
Helix 28
AD1
A
802 818Right-handed alpha
Helix 29
AD2
B
2 10Right-handed alpha
Helix 30
AD3
B
14 23Right-handed alpha
Helix 31
AD4
B
32 43Right-handed alpha
Helix 32
AD5
B
44 46Right-handed 310
Helix 33
AD6
B
48 62Right-handed alpha
Helix 34
AD7
B
298 315Right-handed alpha
Helix 35
AD8
B
320 333Right-handed alpha
Helix 36
AD9
B
362 377Right-handed alpha
Helix 37
AE1
B
378 383Right-handed alpha
Helix 38
AE2
B
385 395Right-handed alpha
Helix 39
AE3
B
395 402Right-handed alpha
Helix 40
AE4
B
402 419Right-handed alpha
Helix 41
AE5
B
446 469Right-handed alpha
Helix 42
AE6
B
476 495Right-handed alpha
Helix 43
AE7
B
497 514Right-handed alpha
Helix 44
AE8
B
536 550Right-handed alpha
Helix 45
AE9
B
566 579Right-handed alpha
Helix 46
AF1
B
580 600Right-handed alpha
Helix 47
AF2
B
615 645Right-handed alpha
Helix 48
AF3
B
660 668Right-handed alpha
Helix 49
AF4
B
675 687Right-handed alpha
Helix 50
AF5
B
688 701Right-handed alpha
Helix 51
AF6
B
710 726Right-handed alpha
Helix 52
AF7
B
738 754Right-handed alpha
Helix 53
AF8
B
783 787Right-handed alpha
Helix 54
AF9
B
791 799Right-handed alpha
Helix 55
AG1
B
802 818Right-handed alpha
Helix 56
AG2
C
50 54Right-handed 310
Helix 57
AG3
C
86 91Right-handed alpha
Helix 58
AG4
C
119 125Right-handed alpha
Helix 59
AG5
C
131 133Right-handed 310
Helix 60
AG6
D
86 91Right-handed 310
Helix 61
AG7
D
119 125Right-handed alpha
Helix 62
AG8
E
50 52Right-handed 310
Helix 63
AG9
E
86 91Right-handed alpha
Helix 64
AH1
E
119 125Right-handed alpha
Helix 65
AH2
E
131 133Right-handed 310
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There are 9 sheets in PDB entry 9CVC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 11first strand
Strand 2
C
24 30anti-parallel
Strand 3
C
68 69anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 11first strand
Strand 2
C
24 30anti-parallel
Strand 3
C
72 73anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
16 17first strand
Strand 2
C
135 139anti-parallel
Strand 3
C
110 117anti-parallel
Strand 4
C
93 101anti-parallel
Strand 5
C
38 44anti-parallel
Strand 6
C
55 62anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
16 17first strand
Strand 2
C
135 139anti-parallel
Strand 3
C
110 117anti-parallel
Strand 4
C
93 101anti-parallel
Strand 5
C
104 107anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
4 12first strand
Strand 2
D
22 30anti-parallel
Strand 3
D
68 76anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
55 62first strand
Strand 2
D
38 44anti-parallel
Strand 3
D
95 101anti-parallel
Strand 4
D
104 105anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
4 11first strand
Strand 2
E
24 30anti-parallel
Strand 3
E
68 69anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
15 17first strand
Strand 2
E
135 139anti-parallel
Strand 3
E
110 117anti-parallel
Strand 4
E
93 101anti-parallel
Strand 5
E
38 45anti-parallel
Strand 6
E
54 62anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
15 17first strand
Strand 2
E
135 139anti-parallel
Strand 3
E
110 117anti-parallel
Strand 4
E
93 101anti-parallel
Strand 5
E
104 107anti-parallel
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