Analysis of interatomic Contacts of Structural Units in PDB entry:
9CVF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9CVF entry

There are 3 chains in PDB entry 9CVF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 20	LEU 527
B	VAL 20	LEU 527
C	SER 4	ILE 205

There are 17 helices in PDB entry 9CVF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	41	45	Right-handed 310
Helix 2	AA2	A	74	77	Right-handed 310
Helix 3	AA3	A	78	86	Right-handed alpha
Helix 4	AA4	A	125	130	Right-handed alpha
Helix 5	AA5	A	219	223	Right-handed 310
Helix 6	AA6	A	389	395	Right-handed alpha
Helix 7	AA7	A	447	457	Right-handed alpha
Helix 8	AA8	B	41	47	Right-handed alpha
Helix 9	AA9	B	74	77	Right-handed 310
Helix 10	AB1	B	78	85	Right-handed alpha
Helix 11	AB2	B	219	223	Right-handed 310
Helix 12	AB3	B	389	395	Right-handed alpha
Helix 13	AB4	B	447	457	Right-handed alpha
Helix 14	AB5	C	41	46	Right-handed alpha
Helix 15	AB6	C	74	77	Right-handed 310
Helix 16	AB7	C	78	86	Right-handed alpha
Helix 17	AB8	C	125	130	Right-handed alpha

There are 23 sheets in PDB entry 9CVF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	58	first strand
Strand 2	A	184	192	anti-parallel
Strand 3	A	95	101	anti-parallel
Strand 4	A	145	149	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	72	first strand
Strand 2	A	166	173	anti-parallel
Strand 3	A	110	116	anti-parallel
Strand 4	A	134	138	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	92	first strand
Strand 2	A	197	199	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	440	444	first strand
Strand 2	A	419	424	anti-parallel
Strand 3	A	233	238	anti-parallel
Strand 4	A	499	501	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	252	253	first strand
Strand 2	A	257	258	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	272	274	first strand
Strand 2	A	377	379	anti-parallel
Strand 3	A	324	333	anti-parallel
Strand 4	A	383	386	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	272	274	first strand
Strand 2	A	377	379	anti-parallel
Strand 3	A	324	333	anti-parallel
Strand 4	A	337	346	anti-parallel
Strand 5	B	426	428	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	280	281	first strand
Strand 2	A	287	288	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	290	291	first strand
Strand 2	A	363	364	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	415	417	first strand
Strand 2	A	487	491	anti-parallel
Strand 3	A	477	483	anti-parallel
Strand 4	A	464	470	anti-parallel
Strand 5	A	507	513	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	427	428	first strand
Strand 2	B	338	346	parallel
Strand 3	B	324	333	anti-parallel
Strand 4	B	377	380	anti-parallel
Strand 5	B	272	274	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	427	428	first strand
Strand 2	B	338	346	parallel
Strand 3	B	324	333	anti-parallel
Strand 4	B	384	386	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	58	first strand
Strand 2	B	184	192	anti-parallel
Strand 3	B	95	101	anti-parallel
Strand 4	B	145	149	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	70	72	first strand
Strand 2	B	166	173	anti-parallel
Strand 3	B	110	116	anti-parallel
Strand 4	B	136	138	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	92	first strand
Strand 2	B	197	201	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	440	444	first strand
Strand 2	B	415	424	anti-parallel
Strand 3	B	233	238	anti-parallel
Strand 4	B	499	501	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	440	444	first strand
Strand 2	B	415	424	anti-parallel
Strand 3	B	487	491	anti-parallel
Strand 4	B	477	483	anti-parallel
Strand 5	B	464	470	anti-parallel
Strand 6	B	507	513	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	252	253	first strand
Strand 2	B	257	258	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	280	281	first strand
Strand 2	B	287	290	anti-parallel
Strand 3	B	364	366	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	9	first strand
Strand 2	C	15	21	anti-parallel
Strand 3	C	145	149	parallel
Strand 4	C	95	101	anti-parallel
Strand 5	C	184	192	anti-parallel
Strand 6	C	49	50	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	9	first strand
Strand 2	C	15	21	anti-parallel
Strand 3	C	145	149	parallel
Strand 4	C	95	101	anti-parallel
Strand 5	C	184	192	anti-parallel
Strand 6	C	56	58	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	69	72	first strand
Strand 2	C	166	171	anti-parallel
Strand 3	C	111	116	anti-parallel
Strand 4	C	134	136	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	92	first strand
Strand 2	C	197	199	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9CVF

Analysis of interatomic Contacts of Structural Units in PDB entry:
9CVF