Analysis of interatomic Contacts of Structural Units in PDB entry:
9CVG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9CVG entry

There are 3 chains in PDB entry 9CVG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 20	LEU 527
B	VAL 20	LEU 527
C	MET 1	LEU 527

There are 23 helices in PDB entry 9CVG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	41	47	Right-handed 310
Helix 2	AA2	A	74	77	Right-handed 310
Helix 3	AA3	A	78	86	Right-handed alpha
Helix 4	AA4	A	125	130	Right-handed alpha
Helix 5	AA5	A	219	223	Right-handed 310
Helix 6	AA6	A	389	395	Right-handed alpha
Helix 7	AA7	A	447	457	Right-handed alpha
Helix 8	AA8	B	41	46	Right-handed 310
Helix 9	AA9	B	74	77	Right-handed 310
Helix 10	AB1	B	78	85	Right-handed alpha
Helix 11	AB2	B	86	88	Right-handed 310
Helix 12	AB3	B	125	130	Right-handed alpha
Helix 13	AB4	B	219	223	Right-handed 310
Helix 14	AB5	B	389	395	Right-handed alpha
Helix 15	AB6	B	447	457	Right-handed alpha
Helix 16	AB7	C	41	47	Right-handed 310
Helix 17	AB8	C	74	77	Right-handed 310
Helix 18	AB9	C	78	85	Right-handed alpha
Helix 19	AC1	C	125	130	Right-handed alpha
Helix 20	AC2	C	219	223	Right-handed 310
Helix 21	AC3	C	265	270	Right-handed alpha
Helix 22	AC4	C	389	395	Right-handed alpha
Helix 23	AC5	C	447	457	Right-handed alpha

There are 26 sheets in PDB entry 9CVG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	50	first strand
Strand 2	A	184	192	anti-parallel
Strand 3	A	56	58	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	50	first strand
Strand 2	A	184	192	anti-parallel
Strand 3	A	95	101	anti-parallel
Strand 4	A	145	149	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	72	first strand
Strand 2	A	166	173	anti-parallel
Strand 3	A	110	116	anti-parallel
Strand 4	A	134	138	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	92	first strand
Strand 2	A	197	201	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	440	444	first strand
Strand 2	A	419	424	anti-parallel
Strand 3	A	233	238	anti-parallel
Strand 4	A	499	501	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	252	253	first strand
Strand 2	A	257	258	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	272	274	first strand
Strand 2	A	377	386	anti-parallel
Strand 3	A	324	333	anti-parallel
Strand 4	A	337	348	anti-parallel
Strand 5	A	363	366	anti-parallel
Strand 6	A	288	291	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	272	274	first strand
Strand 2	A	377	386	anti-parallel
Strand 3	A	324	333	anti-parallel
Strand 4	A	337	348	anti-parallel
Strand 5	B	426	428	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	415	417	first strand
Strand 2	A	488	491	anti-parallel
Strand 3	A	477	482	anti-parallel
Strand 4	A	464	470	anti-parallel
Strand 5	A	507	513	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	426	428	first strand
Strand 2	B	337	348	parallel
Strand 3	B	324	334	anti-parallel
Strand 4	B	384	386	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	426	428	first strand
Strand 2	B	337	348	parallel
Strand 3	B	363	366	anti-parallel
Strand 4	B	287	292	anti-parallel
Strand 5	B	272	281	anti-parallel
Strand 6	B	376	379	anti-parallel
Strand 7	B	324	334	anti-parallel
Strand 8	B	384	386	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	50	first strand
Strand 2	B	184	192	anti-parallel
Strand 3	B	56	58	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	50	first strand
Strand 2	B	184	192	anti-parallel
Strand 3	B	95	101	anti-parallel
Strand 4	B	146	149	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	72	first strand
Strand 2	B	166	177	anti-parallel
Strand 3	B	107	116	anti-parallel
Strand 4	B	134	138	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	158	159	first strand
Strand 2	B	90	92	anti-parallel
Strand 3	B	197	199	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	440	444	first strand
Strand 2	B	419	424	anti-parallel
Strand 3	B	235	237	anti-parallel
Strand 4	B	500	501	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	252	253	first strand
Strand 2	B	257	258	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	415	417	first strand
Strand 2	B	488	491	anti-parallel
Strand 3	B	477	482	anti-parallel
Strand 4	B	464	470	anti-parallel
Strand 5	B	507	513	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	8	first strand
Strand 2	C	15	21	anti-parallel
Strand 3	C	142	149	parallel
Strand 4	C	95	101	anti-parallel
Strand 5	C	184	192	anti-parallel
Strand 6	C	49	58	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	67	72	first strand
Strand 2	C	166	176	anti-parallel
Strand 3	C	108	116	anti-parallel
Strand 4	C	134	138	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	88	92	first strand
Strand 2	C	197	201	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	419	420	first strand
Strand 2	C	236	238	anti-parallel
Strand 3	C	499	501	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	252	253	first strand
Strand 2	C	257	258	anti-parallel

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There are 7 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	272	274	first strand
Strand 2	C	377	386	anti-parallel
Strand 3	C	324	334	anti-parallel
Strand 4	C	337	348	anti-parallel
Strand 5	C	363	366	anti-parallel
Strand 6	C	287	291	anti-parallel
Strand 7	C	280	281	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	415	417	first strand
Strand 2	C	488	491	anti-parallel
Strand 3	C	477	482	anti-parallel
Strand 4	C	464	470	anti-parallel
Strand 5	C	507	513	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	423	424	first strand
Strand 2	C	440	441	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9CVG

Analysis of interatomic Contacts of Structural Units in PDB entry:
9CVG