Analysis of interatomic Contacts of Structural Units in PDB entry:
9CX5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9CX5 entry

There are 2 chains in PDB entry 9CX5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 8ARG 335
B
 PHE 8ARG 335
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 21 helices in PDB entry 9CX5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 30Right-handed alpha
Helix 2
AA2
A
39 52Right-handed alpha
Helix 3
AA3
A
90 101Right-handed alpha
Helix 4
AA4
A
110 112Right-handed 310
Helix 5
AA5
A
113 127Right-handed alpha
Helix 6
AA6
A
173 179Right-handed alpha
Helix 7
AA7
A
180 182Right-handed 310
Helix 8
AA8
A
185 191Right-handed 310
Helix 9
AA9
A
196 216Right-handed alpha
Helix 10
AB1
A
265 270Right-handed 310
Helix 11
AB2
A
281 299Right-handed alpha
Helix 12
AB3
B
22 30Right-handed alpha
Helix 13
AB4
B
39 53Right-handed alpha
Helix 14
AB5
B
90 100Right-handed alpha
Helix 15
AB6
B
112 127Right-handed alpha
Helix 16
AB7
B
173 181Right-handed alpha
Helix 17
AB8
B
185 191Right-handed 310
Helix 18
AB9
B
196 217Right-handed alpha
Helix 19
AC1
B
265 273Right-handed 310
Helix 20
AC2
B
281 299Right-handed alpha
Helix 21
AC3
B
330 335Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 9CX5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 16first strand
Strand 2
A
67 74parallel
Strand 3
A
56 62anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 84first strand
Strand 2
A
146 154parallel
Strand 3
A
134 142anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 167first strand
Strand 2
A
237 245parallel
Strand 3
A
223 231anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
251 258first strand
Strand 2
A
318 326parallel
Strand 3
A
305 313anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 16first strand
Strand 2
B
67 74parallel
Strand 3
B
56 64anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 84first strand
Strand 2
B
146 154parallel
Strand 3
B
134 142anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
161 167first strand
Strand 2
B
237 245parallel
Strand 3
B
223 231anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
251 257first strand
Strand 2
B
318 326parallel
Strand 3
B
305 313anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il