Analysis of interatomic Contacts of Structural Units in PDB entry:
9CXB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9CXB entry

There are 7 chains in PDB entry 9CXB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 7	VAL 487
B	ASP 10	ASN 417
C	ASN 8	TYR 447
D	ASN 9	LEU 413
E	GLY 25	ARG 232
I	ASN 1	LEU 105
J	VAL 2	SER 117

There are 43 helices in PDB entry 9CXB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	7	21	Right-handed alpha
Helix 2	AA2	A	170	173	Right-handed 310
Helix 3	AA3	A	218	225	Right-handed alpha
Helix 4	AA4	A	225	237	Right-handed alpha
Helix 5	AA5	A	238	241	Right-handed 310
Helix 6	AA6	A	246	270	Right-handed alpha
Helix 7	AA7	A	279	308	Right-handed alpha
Helix 8	AA8	A	461	486	Right-handed alpha
Helix 9	AA9	B	12	23	Right-handed alpha
Helix 10	AB1	B	88	93	Right-handed alpha
Helix 11	AB2	B	142	146	Right-handed 310
Helix 12	AB3	B	174	177	Right-handed 310
Helix 13	AB4	B	225	230	Right-handed alpha
Helix 14	AB5	B	230	243	Right-handed alpha
Helix 15	AB6	B	244	247	Right-handed 310
Helix 16	AB7	B	251	274	Right-handed alpha
Helix 17	AB8	B	284	310	Right-handed alpha
Helix 18	AB9	B	390	417	Right-handed alpha
Helix 19	AC1	C	9	20	Right-handed alpha
Helix 20	AC2	C	84	91	Right-handed 310
Helix 21	AC3	C	170	173	Right-handed 310
Helix 22	AC4	C	218	225	Right-handed alpha
Helix 23	AC5	C	225	236	Right-handed alpha
Helix 24	AC6	C	237	242	Right-handed 310
Helix 25	AC7	C	246	267	Right-handed alpha
Helix 26	AC8	C	279	306	Right-handed alpha
Helix 27	AC9	C	423	428	Right-handed alpha
Helix 28	AD1	C	431	445	Right-handed alpha
Helix 29	AD2	D	10	22	Right-handed alpha
Helix 30	AD3	D	86	93	Right-handed 310
Helix 31	AD4	D	141	145	Right-handed 310
Helix 32	AD5	D	222	229	Right-handed alpha
Helix 33	AD6	D	229	241	Right-handed alpha
Helix 34	AD7	D	242	246	Right-handed 310
Helix 35	AD8	D	250	272	Right-handed alpha
Helix 36	AD9	D	273	276	Right-handed 310
Helix 37	AE1	D	285	309	Right-handed alpha
Helix 38	AE2	D	387	412	Right-handed alpha
Helix 39	AE3	E	26	35	Right-handed alpha
Helix 40	AE4	E	99	106	Right-handed 310
Helix 41	AE5	I	79	83	Right-handed 310
Helix 42	AE6	J	62	65	Right-handed 310
Helix 43	AE7	J	87	91	Right-handed 310

There are 26 sheets in PDB entry 9CXB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	83	first strand
Strand 2	A	114	118	anti-parallel
Strand 3	A	125	135	anti-parallel
Strand 4	A	56	66	anti-parallel
Strand 5	A	36	51	anti-parallel
Strand 6	A	164	168	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	106	first strand
Strand 2	A	125	135	anti-parallel
Strand 3	A	56	66	anti-parallel
Strand 4	A	36	51	anti-parallel
Strand 5	A	175	176	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	98	first strand
Strand 2	A	153	156	anti-parallel
Strand 3	A	204	216	anti-parallel
Strand 4	A	147	150	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	98	first strand
Strand 2	A	153	156	anti-parallel
Strand 3	A	204	216	anti-parallel
Strand 4	A	186	199	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	86	first strand
Strand 2	B	117	122	anti-parallel
Strand 3	B	129	138	anti-parallel
Strand 4	B	59	70	anti-parallel
Strand 5	B	39	54	anti-parallel
Strand 6	B	167	171	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	108	109	first strand
Strand 2	B	129	138	anti-parallel
Strand 3	B	59	70	anti-parallel
Strand 4	B	39	54	anti-parallel
Strand 5	B	179	181	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	101	first strand
Strand 2	B	157	159	anti-parallel
Strand 3	B	209	221	anti-parallel
Strand 4	B	150	154	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	101	first strand
Strand 2	B	157	159	anti-parallel
Strand 3	B	209	221	anti-parallel
Strand 4	B	191	204	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	81	83	first strand
Strand 2	C	114	118	anti-parallel
Strand 3	C	123	128	anti-parallel
Strand 4	C	56	68	anti-parallel
Strand 5	C	36	51	anti-parallel
Strand 6	C	164	168	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	106	first strand
Strand 2	C	130	135	anti-parallel
Strand 3	C	56	68	anti-parallel
Strand 4	C	36	51	anti-parallel
Strand 5	C	175	176	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	97	98	first strand
Strand 2	C	147	155	anti-parallel
Strand 3	C	204	216	anti-parallel
Strand 4	C	186	199	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	128	129	first strand
Strand 2	D	65	68	anti-parallel
Strand 3	D	38	46	anti-parallel
Strand 4	D	166	170	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	128	129	first strand
Strand 2	D	65	68	anti-parallel
Strand 3	D	38	46	anti-parallel
Strand 4	D	178	180	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	48	53	first strand
Strand 2	D	58	63	anti-parallel
Strand 3	D	132	134	anti-parallel
Strand 4	D	107	108	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	82	85	first strand
Strand 2	D	118	121	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	99	100	first strand
Strand 2	D	151	157	anti-parallel
Strand 3	D	212	217	anti-parallel
Strand 4	D	194	198	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	201	203	first strand
Strand 2	D	208	210	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	95	98	first strand
Strand 2	E	129	134	anti-parallel
Strand 3	E	138	150	anti-parallel
Strand 4	E	116	121	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	95	98	first strand
Strand 2	E	129	134	anti-parallel
Strand 3	E	138	150	anti-parallel
Strand 4	E	71	83	anti-parallel
Strand 5	E	51	66	anti-parallel
Strand 6	E	179	182	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	111	113	first strand
Strand 2	E	162	171	anti-parallel
Strand 3	E	219	231	anti-parallel
Strand 4	E	201	214	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	12	first strand
Strand 2	I	101	104	parallel
Strand 3	I	85	90	anti-parallel
Strand 4	I	33	38	anti-parallel
Strand 5	I	45	49	anti-parallel
Strand 6	I	53	54	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	12	first strand
Strand 2	I	101	104	parallel
Strand 3	I	85	90	anti-parallel
Strand 4	I	96	97	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	19	20	first strand
Strand 2	I	70	75	anti-parallel
Strand 3	I	23	24	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	19	20	first strand
Strand 2	I	70	75	anti-parallel
Strand 3	I	62	65	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	3	6	first strand
Strand 2	J	17	25	anti-parallel
Strand 3	J	78	84	anti-parallel
Strand 4	J	68	73	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	12	first strand
Strand 2	J	112	116	parallel
Strand 3	J	93	98	anti-parallel
Strand 4	J	34	39	anti-parallel
Strand 5	J	45	51	anti-parallel
Strand 6	J	58	60	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9CXB

Analysis of interatomic Contacts of Structural Units in PDB entry:
9CXB