Analysis of interatomic Contacts of Structural Units in PDB entry:
9CXJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9CXJ entry

There are 4 chains in PDB entry 9CXJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 231VAL 825
B
 TYR 231MET 823
C
 PRO 28ILE 87
D
 PRO 28ILE 87
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 9CXJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
231 251Right-handed alpha
Helix 2
AA2
A
256 268Right-handed alpha
Helix 3
AA3
A
289 298Right-handed alpha
Helix 4
AA4
A
347 356Right-handed alpha
Helix 5
AA5
A
415 461Right-handed alpha
Helix 6
AA6
A
463 471Right-handed alpha
Helix 7
AA7
A
472 478Right-handed alpha
Helix 8
AA8
A
486 498Right-handed alpha
Helix 9
AA9
A
517 532Right-handed alpha
Helix 10
AB1
A
541 556Right-handed alpha
Helix 11
AB2
A
563 580Right-handed alpha
Helix 12
AB3
A
582 587Right-handed 310
Helix 13
AB4
A
588 600Right-handed alpha
Helix 14
AB5
A
610 618Right-handed alpha
Helix 15
AB6
A
619 625Right-handed alpha
Helix 16
AB7
A
628 644Right-handed alpha
Helix 17
AB8
A
654 670Right-handed alpha
Helix 18
AB9
A
673 693Right-handed alpha
Helix 19
AC1
A
696 707Right-handed alpha
Helix 20
AC2
A
707 724Right-handed alpha
Helix 21
AC3
A
725 729Right-handed 310
Helix 22
AC4
A
730 756Right-handed alpha
Helix 23
AC5
A
765 770Right-handed 310
Helix 24
AC6
A
771 783Right-handed alpha
Helix 25
AC7
A
783 795Right-handed alpha
Helix 26
AC8
A
798 825Right-handed alpha
Helix 27
AC9
B
232 251Right-handed alpha
Helix 28
AD1
B
256 268Right-handed alpha
Helix 29
AD2
B
268 273Right-handed alpha
Helix 30
AD3
B
289 298Right-handed alpha
Helix 31
AD4
B
341 346Right-handed alpha
Helix 32
AD5
B
347 356Right-handed alpha
Helix 33
AD6
B
364 367Right-handed 310
Helix 34
AD7
B
415 461Right-handed alpha
Helix 35
AD8
B
463 469Right-handed alpha
Helix 36
AD9
B
472 478Right-handed alpha
Helix 37
AE1
B
486 496Right-handed alpha
Helix 38
AE2
B
502 506Right-handed 310
Helix 39
AE3
B
517 532Right-handed alpha
Helix 40
AE4
B
541 556Right-handed alpha
Helix 41
AE5
B
563 580Right-handed alpha
Helix 42
AE6
B
582 587Right-handed 310
Helix 43
AE7
B
588 601Right-handed alpha
Helix 44
AE8
B
610 618Right-handed alpha
Helix 45
AE9
B
619 625Right-handed alpha
Helix 46
AF1
B
628 644Right-handed alpha
Helix 47
AF2
B
654 671Right-handed alpha
Helix 48
AF3
B
673 692Right-handed alpha
Helix 49
AF4
B
696 707Right-handed alpha
Helix 50
AF5
B
707 724Right-handed alpha
Helix 51
AF6
B
725 729Right-handed 310
Helix 52
AF7
B
730 757Right-handed alpha
Helix 53
AF8
B
765 770Right-handed 310
Helix 54
AF9
B
771 783Right-handed alpha
Helix 55
AG1
B
783 795Right-handed alpha
Helix 56
AG2
B
798 823Right-handed alpha
Helix 57
AG3
C
74 84Right-handed alpha
Helix 58
AG4
D
74 84Right-handed alpha
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There are 2 sheets in PDB entry 9CXJ. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
330 335first strand
Strand 2
A
317 324anti-parallel
Strand 3
A
276 282anti-parallel
Strand 4
A
399 405anti-parallel
Strand 5
A
386 393anti-parallel
Strand 6
A
358 362anti-parallel
Strand 7
D
29 31anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
330 335first strand
Strand 2
B
317 324anti-parallel
Strand 3
B
276 282anti-parallel
Strand 4
B
399 405anti-parallel
Strand 5
B
386 393anti-parallel
Strand 6
B
358 362anti-parallel
Strand 7
C
29 31anti-parallel
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