Analysis of interatomic Contacts of Structural Units in PDB entry:
9CZM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9CZM entry

There are 8 chains in PDB entry 9CZM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	THR 36	LYS 235
F	THR 36	LYS 235
H	THR 36	LYS 235
A	SER 16	ASP 1056
B	SER 16	ASP 1056
C	SER 16	ASP 1056
D	SER 16	ASP 1056
G	PHE 2	LYS 235

There are185 helices in PDB entry 9CZM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	40	78	Right-handed alpha
Helix 2	AA2	E	133	140	Right-handed alpha
Helix 3	AA3	E	152	170	Right-handed alpha
Helix 4	AA4	E	196	235	Right-handed alpha
Helix 5	AA5	F	40	78	Right-handed alpha
Helix 6	AA6	F	133	140	Right-handed alpha
Helix 7	AA7	F	152	170	Right-handed alpha
Helix 8	AA8	F	196	235	Right-handed alpha
Helix 9	AA9	H	40	78	Right-handed alpha
Helix 10	AB1	H	133	140	Right-handed alpha
Helix 11	AB2	H	152	170	Right-handed alpha
Helix 12	AB3	H	196	235	Right-handed alpha
Helix 13	AB4	A	21	54	Right-handed alpha
Helix 14	AB5	A	92	106	Right-handed alpha
Helix 15	AB6	A	109	134	Right-handed alpha
Helix 16	AB7	A	147	171	Right-handed alpha
Helix 17	AB8	A	173	179	Right-handed alpha
Helix 18	AB9	A	180	188	Right-handed alpha
Helix 19	AC1	A	190	200	Right-handed alpha
Helix 20	AC2	A	205	215	Right-handed 310
Helix 21	AC3	A	216	224	Right-handed alpha
Helix 22	AC4	A	229	259	Right-handed alpha
Helix 23	AC5	A	273	286	Right-handed alpha
Helix 24	AC6	A	297	325	Right-handed alpha
Helix 25	AC7	A	352	364	Right-handed alpha
Helix 26	AC8	A	384	393	Right-handed alpha
Helix 27	AC9	A	407	414	Right-handed alpha
Helix 28	AD1	A	415	419	Right-handed 310
Helix 29	AD2	A	432	451	Right-handed alpha
Helix 30	AD3	A	462	470	Right-handed alpha
Helix 31	AD4	A	476	480	Right-handed 310
Helix 32	AD5	A	486	500	Right-handed alpha
Helix 33	AD6	A	502	512	Right-handed alpha
Helix 34	AD7	A	523	533	Right-handed alpha
Helix 35	AD8	A	549	560	Right-handed alpha
Helix 36	AD9	A	601	606	Right-handed alpha
Helix 37	AE1	A	607	609	Right-handed 310
Helix 38	AE2	A	699	704	Right-handed alpha
Helix 39	AE3	A	706	713	Right-handed alpha
Helix 40	AE4	A	734	739	Right-handed alpha
Helix 41	AE5	A	740	743	Right-handed 310
Helix 42	AE6	A	759	771	Right-handed alpha
Helix 43	AE7	A	785	792	Right-handed alpha
Helix 44	AE8	A	793	795	Right-handed 310
Helix 45	AE9	A	817	830	Right-handed alpha
Helix 46	AF1	A	884	891	Right-handed 310
Helix 47	AF2	A	902	905	Right-handed 310
Helix 48	AF3	A	906	911	Right-handed alpha
Helix 49	AF4	A	916	920	Right-handed 310
Helix 50	AF5	A	921	930	Right-handed alpha
Helix 51	AF6	A	932	943	Right-handed alpha
Helix 52	AF7	A	946	957	Right-handed alpha
Helix 53	AF8	A	965	971	Right-handed alpha
Helix 54	AF9	A	987	994	Right-handed alpha
Helix 55	AG1	B	21	54	Right-handed alpha
Helix 56	AG2	B	92	106	Right-handed alpha
Helix 57	AG3	B	109	134	Right-handed alpha
Helix 58	AG4	B	147	171	Right-handed alpha
Helix 59	AG5	B	173	179	Right-handed alpha
Helix 60	AG6	B	180	188	Right-handed alpha
Helix 61	AG7	B	190	200	Right-handed alpha
Helix 62	AG8	B	205	215	Right-handed 310
Helix 63	AG9	B	216	224	Right-handed alpha
Helix 64	AH1	B	229	259	Right-handed alpha
Helix 65	AH2	B	273	286	Right-handed alpha
Helix 66	AH3	B	297	325	Right-handed alpha
Helix 67	AH4	B	352	364	Right-handed alpha
Helix 68	AH5	B	384	393	Right-handed alpha
Helix 69	AH6	B	407	414	Right-handed alpha
Helix 70	AH7	B	415	419	Right-handed 310
Helix 71	AH8	B	432	451	Right-handed alpha
Helix 72	AH9	B	462	470	Right-handed alpha
Helix 73	AI1	B	476	480	Right-handed 310
Helix 74	AI2	B	486	500	Right-handed alpha
Helix 75	AI3	B	502	512	Right-handed alpha
Helix 76	AI4	B	523	533	Right-handed alpha
Helix 77	AI5	B	549	560	Right-handed alpha
Helix 78	AI6	B	601	606	Right-handed alpha
Helix 79	AI7	B	607	609	Right-handed 310
Helix 80	AI8	B	699	704	Right-handed alpha
Helix 81	AI9	B	706	713	Right-handed alpha
Helix 82	AJ1	B	734	739	Right-handed alpha
Helix 83	AJ2	B	740	743	Right-handed 310
Helix 84	AJ3	B	759	771	Right-handed alpha
Helix 85	AJ4	B	785	792	Right-handed alpha
Helix 86	AJ5	B	793	795	Right-handed 310
Helix 87	AJ6	B	817	830	Right-handed alpha
Helix 88	AJ7	B	884	891	Right-handed 310
Helix 89	AJ8	B	902	905	Right-handed 310
Helix 90	AJ9	B	906	911	Right-handed alpha
Helix 91	AK1	B	916	920	Right-handed 310
Helix 92	AK2	B	921	930	Right-handed alpha
Helix 93	AK3	B	932	943	Right-handed alpha
Helix 94	AK4	B	946	957	Right-handed alpha
Helix 95	AK5	B	965	971	Right-handed alpha
Helix 96	AK6	B	987	994	Right-handed alpha
Helix 97	AK7	C	21	54	Right-handed alpha
Helix 98	AK8	C	92	106	Right-handed alpha
Helix 99	AK9	C	109	134	Right-handed alpha
Helix 100	AL1	C	147	171	Right-handed alpha
Helix 101	AL2	C	173	179	Right-handed alpha
Helix 102	AL3	C	180	188	Right-handed alpha
Helix 103	AL4	C	190	200	Right-handed alpha
Helix 104	AL5	C	205	215	Right-handed 310
Helix 105	AL6	C	216	224	Right-handed alpha
Helix 106	AL7	C	229	259	Right-handed alpha
Helix 107	AL8	C	273	286	Right-handed alpha
Helix 108	AL9	C	297	325	Right-handed alpha
Helix 109	AM1	C	352	364	Right-handed alpha
Helix 110	AM2	C	384	393	Right-handed alpha
Helix 111	AM3	C	407	414	Right-handed alpha
Helix 112	AM4	C	415	419	Right-handed 310
Helix 113	AM5	C	432	451	Right-handed alpha
Helix 114	AM6	C	462	470	Right-handed alpha
Helix 115	AM7	C	476	480	Right-handed 310
Helix 116	AM8	C	486	500	Right-handed alpha
Helix 117	AM9	C	502	512	Right-handed alpha
Helix 118	AN1	C	523	533	Right-handed alpha
Helix 119	AN2	C	549	560	Right-handed alpha
Helix 120	AN3	C	601	606	Right-handed alpha
Helix 121	AN4	C	607	609	Right-handed 310
Helix 122	AN5	C	699	704	Right-handed alpha
Helix 123	AN6	C	706	713	Right-handed alpha
Helix 124	AN7	C	734	739	Right-handed alpha
Helix 125	AN8	C	740	743	Right-handed 310
Helix 126	AN9	C	759	771	Right-handed alpha
Helix 127	AO1	C	785	792	Right-handed alpha
Helix 128	AO2	C	793	795	Right-handed 310
Helix 129	AO3	C	817	830	Right-handed alpha
Helix 130	AO4	C	884	891	Right-handed 310
Helix 131	AO5	C	902	905	Right-handed 310
Helix 132	AO6	C	906	911	Right-handed alpha
Helix 133	AO7	C	916	920	Right-handed 310
Helix 134	AO8	C	921	930	Right-handed alpha
Helix 135	AO9	C	932	943	Right-handed alpha
Helix 136	AP1	C	946	957	Right-handed alpha
Helix 137	AP2	C	965	971	Right-handed alpha
Helix 138	AP3	C	987	994	Right-handed alpha
Helix 139	AP4	D	21	54	Right-handed alpha
Helix 140	AP5	D	92	106	Right-handed alpha
Helix 141	AP6	D	109	134	Right-handed alpha
Helix 142	AP7	D	147	171	Right-handed alpha
Helix 143	AP8	D	173	179	Right-handed alpha
Helix 144	AP9	D	180	188	Right-handed alpha
Helix 145	AQ1	D	190	200	Right-handed alpha
Helix 146	AQ2	D	205	215	Right-handed 310
Helix 147	AQ3	D	216	224	Right-handed alpha
Helix 148	AQ4	D	229	259	Right-handed alpha
Helix 149	AQ5	D	273	286	Right-handed alpha
Helix 150	AQ6	D	297	325	Right-handed alpha
Helix 151	AQ7	D	352	364	Right-handed alpha
Helix 152	AQ8	D	384	393	Right-handed alpha
Helix 153	AQ9	D	407	414	Right-handed alpha
Helix 154	AR1	D	415	419	Right-handed 310
Helix 155	AR2	D	432	451	Right-handed alpha
Helix 156	AR3	D	462	470	Right-handed alpha
Helix 157	AR4	D	476	480	Right-handed 310
Helix 158	AR5	D	486	500	Right-handed alpha
Helix 159	AR6	D	502	512	Right-handed alpha
Helix 160	AR7	D	523	533	Right-handed alpha
Helix 161	AR8	D	549	560	Right-handed alpha
Helix 162	AR9	D	601	606	Right-handed alpha
Helix 163	AS1	D	607	609	Right-handed 310
Helix 164	AS2	D	699	704	Right-handed alpha
Helix 165	AS3	D	706	713	Right-handed alpha
Helix 166	AS4	D	734	739	Right-handed alpha
Helix 167	AS5	D	740	743	Right-handed 310
Helix 168	AS6	D	759	771	Right-handed alpha
Helix 169	AS7	D	785	792	Right-handed alpha
Helix 170	AS8	D	793	795	Right-handed 310
Helix 171	AS9	D	817	830	Right-handed alpha
Helix 172	AT1	D	884	891	Right-handed 310
Helix 173	AT2	D	902	905	Right-handed 310
Helix 174	AT3	D	906	911	Right-handed alpha
Helix 175	AT4	D	916	920	Right-handed 310
Helix 176	AT5	D	921	930	Right-handed alpha
Helix 177	AT6	D	932	943	Right-handed alpha
Helix 178	AT7	D	946	957	Right-handed alpha
Helix 179	AT8	D	965	971	Right-handed alpha
Helix 180	AT9	D	987	994	Right-handed alpha
Helix 181	AU1	G	2	6	Right-handed 310
Helix 182	AU2	G	40	78	Right-handed alpha
Helix 183	AU3	G	133	140	Right-handed alpha
Helix 184	AU4	G	152	170	Right-handed alpha
Helix 185	AU5	G	196	235	Right-handed alpha

There are 28 sheets in PDB entry 9CZM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	80	99	first strand
Strand 2	E	109	120	anti-parallel
Strand 3	E	128	130	anti-parallel
Strand 4	E	185	190	parallel
Strand 5	E	176	181	anti-parallel
Strand 6	E	80	99	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	80	99	first strand
Strand 2	F	109	120	anti-parallel
Strand 3	F	128	130	anti-parallel
Strand 4	F	185	190	parallel
Strand 5	F	176	181	anti-parallel
Strand 6	F	80	99	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	80	99	first strand
Strand 2	H	109	120	anti-parallel
Strand 3	H	128	130	anti-parallel
Strand 4	H	185	190	parallel
Strand 5	H	176	181	anti-parallel
Strand 6	H	80	99	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	139	141	first strand
Strand 2	A	201	203	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	398	402	first strand
Strand 2	A	374	379	parallel
Strand 3	A	344	349	parallel
Strand 4	A	421	425	parallel
Strand 5	A	456	460	parallel
Strand 6	A	482	485	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	535	540	first strand
Strand 2	A	594	599	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	686	687	first strand
Strand 2	A	961	962	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	776	780	first strand
Strand 2	A	754	758	parallel
Strand 3	A	718	724	parallel
Strand 4	A	797	804	parallel
Strand 5	A	878	881	parallel
Strand 6	A	914	915	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	976	981	first strand
Strand 2	A	1047	1053	anti-parallel
Strand 3	A	1011	1017	anti-parallel
Strand 4	A	1031	1035	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	139	141	first strand
Strand 2	B	201	203	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	398	402	first strand
Strand 2	B	374	379	parallel
Strand 3	B	344	349	parallel
Strand 4	B	421	425	parallel
Strand 5	B	456	460	parallel
Strand 6	B	482	485	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	535	540	first strand
Strand 2	B	594	599	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	686	687	first strand
Strand 2	B	961	962	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	776	780	first strand
Strand 2	B	754	758	parallel
Strand 3	B	718	724	parallel
Strand 4	B	797	804	parallel
Strand 5	B	878	881	parallel
Strand 6	B	914	915	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	976	981	first strand
Strand 2	B	1047	1053	anti-parallel
Strand 3	B	1011	1017	anti-parallel
Strand 4	B	1031	1035	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	139	141	first strand
Strand 2	C	201	203	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	398	402	first strand
Strand 2	C	374	379	parallel
Strand 3	C	344	349	parallel
Strand 4	C	421	425	parallel
Strand 5	C	456	460	parallel
Strand 6	C	482	485	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	535	540	first strand
Strand 2	C	594	599	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	686	687	first strand
Strand 2	C	961	962	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	776	780	first strand
Strand 2	C	754	758	parallel
Strand 3	C	718	724	parallel
Strand 4	C	797	804	parallel
Strand 5	C	878	881	parallel
Strand 6	C	914	915	parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	976	981	first strand
Strand 2	C	1047	1053	anti-parallel
Strand 3	C	1011	1017	anti-parallel
Strand 4	C	1031	1035	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	139	141	first strand
Strand 2	D	201	203	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	398	402	first strand
Strand 2	D	374	379	parallel
Strand 3	D	344	349	parallel
Strand 4	D	421	425	parallel
Strand 5	D	456	460	parallel
Strand 6	D	482	485	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	535	540	first strand
Strand 2	D	594	599	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	686	687	first strand
Strand 2	D	961	962	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	776	780	first strand
Strand 2	D	754	758	parallel
Strand 3	D	718	724	parallel
Strand 4	D	797	804	parallel
Strand 5	D	878	881	parallel
Strand 6	D	914	915	parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	976	981	first strand
Strand 2	D	1047	1053	anti-parallel
Strand 3	D	1011	1017	anti-parallel
Strand 4	D	1031	1035	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	80	99	first strand
Strand 2	G	109	120	anti-parallel
Strand 3	G	128	130	anti-parallel
Strand 4	G	185	190	parallel
Strand 5	G	176	181	anti-parallel
Strand 6	G	80	99	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9CZM

Analysis of interatomic Contacts of Structural Units in PDB entry:
9CZM