Analysis of interatomic Contacts of Structural Units in PDB entry:
9D02


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9D02 entry

There are 2 chains in PDB entry 9D02 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2HIS 338
B
 THR 2CYS 330
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 9D02. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
32 36Right-handed 310
Helix 2
AA2
A
63 68Right-handed alpha
Helix 3
AA3
A
69 78Right-handed alpha
Helix 4
AA4
A
82 94Right-handed alpha
Helix 5
AA5
A
98 102Right-handed 310
Helix 6
AA6
A
205 226Right-handed alpha
Helix 7
AA7
A
229 244Right-handed alpha
Helix 8
AA8
A
286 300Right-handed alpha
Helix 9
AA9
A
315 325Right-handed alpha
Helix 10
AB1
A
330 334Right-handed 310
Helix 11
AB2
B
32 36Right-handed 310
Helix 12
AB3
B
63 68Right-handed alpha
Helix 13
AB4
B
69 78Right-handed alpha
Helix 14
AB5
B
82 94Right-handed alpha
Helix 15
AB6
B
205 226Right-handed alpha
Helix 16
AB7
B
229 244Right-handed alpha
Helix 17
AB8
B
286 299Right-handed alpha
Helix 18
AB9
B
315 325Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 9D02. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 163first strand
Strand 2
A
144 151anti-parallel
Strand 3
A
190 199anti-parallel
Strand 4
A
3 9anti-parallel
Strand 5
A
14 20anti-parallel
Strand 6
A
263 269anti-parallel
Strand 7
A
275 281anti-parallel
Strand 8
A
312 314parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 44first strand
Strand 2
A
53 59anti-parallel
Strand 3
A
110 118anti-parallel
Strand 4
A
131 140anti-parallel
Strand 5
A
175 184anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
158 163first strand
Strand 2
B
144 151anti-parallel
Strand 3
B
190 199anti-parallel
Strand 4
B
3 9anti-parallel
Strand 5
B
14 20anti-parallel
Strand 6
B
263 269anti-parallel
Strand 7
B
275 281anti-parallel
Strand 8
B
312 314parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 44first strand
Strand 2
B
53 59anti-parallel
Strand 3
B
110 118anti-parallel
Strand 4
B
131 140anti-parallel
Strand 5
B
175 184anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il