Analysis of interatomic Contacts of Structural Units in PDB entry:
9D0A

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9D0A entry

There are 5 chains in PDB entry 9D0A (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ASP 38	ASN 340
G	VAL 30	PHE 61
E	ASP 1	LYS 248
R	SER 37	LEU 359
A	SER 12	VAL 366

There are 32 helices in PDB entry 9D0A. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	G	31	44	Right-handed alpha
Helix 2	AA2	G	55	59	Right-handed 310
Helix 3	AA3	E	28	32	Right-handed 310
Helix 4	AA4	E	74	76	Right-handed 310
Helix 5	AA5	E	87	91	Right-handed 310
Helix 6	AA6	R	64	71	Right-handed alpha
Helix 7	AA7	R	71	76	Right-handed alpha
Helix 8	AA8	R	76	102	Right-handed alpha
Helix 9	AA9	R	108	127	Right-handed alpha
Helix 10	AB1	R	127	137	Right-handed alpha
Helix 11	AB2	R	144	174	Right-handed alpha
Helix 12	AB3	R	182	186	Right-handed 310
Helix 13	AB4	R	187	207	Right-handed alpha
Helix 14	AB5	R	207	212	Right-handed alpha
Helix 15	AB6	R	219	222	Right-handed 310
Helix 16	AB7	R	231	238	Right-handed alpha
Helix 17	AB8	R	238	251	Right-handed alpha
Helix 18	AB9	R	251	270	Right-handed alpha
Helix 19	AC1	R	281	317	Right-handed alpha
Helix 20	AC2	R	319	321	Right-handed 310
Helix 21	AC3	R	322	345	Right-handed alpha
Helix 22	AC4	R	348	359	Right-handed alpha
Helix 23	AC5	A	13	34	Right-handed alpha
Helix 24	AC6	A	51	55	Right-handed 310
Helix 25	AC7	A	215	221	Right-handed 310
Helix 26	AC8	A	237	250	Right-handed alpha
Helix 27	AC9	A	251	255	Right-handed 310
Helix 28	AD1	A	265	276	Right-handed alpha
Helix 29	AD2	A	279	283	Right-handed 310
Helix 30	AD3	A	284	290	Right-handed 310
Helix 31	AD4	A	305	323	Right-handed alpha
Helix 32	AD5	A	342	363	Right-handed alpha

There are 14 sheets in PDB entry 9D0A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	51	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	88	94	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	134	139	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	152	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	165	170	anti-parallel
Strand 4	B	176	181	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	208	212	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	260	264	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	277	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	307	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	7	first strand
Strand 2	E	18	25	anti-parallel
Strand 3	E	78	83	anti-parallel
Strand 4	E	68	73	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	58	60	first strand
Strand 2	E	45	51	anti-parallel
Strand 3	E	33	39	anti-parallel
Strand 4	E	93	99	anti-parallel
Strand 5	E	115	116	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	140	141	first strand
Strand 2	E	156	161	anti-parallel
Strand 3	E	211	216	anti-parallel
Strand 4	E	203	208	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	146	149	first strand
Strand 2	E	243	247	parallel
Strand 3	E	226	231	anti-parallel
Strand 4	E	174	179	anti-parallel
Strand 5	E	186	190	anti-parallel
Strand 6	E	194	195	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	146	149	first strand
Strand 2	E	243	247	parallel
Strand 3	E	226	231	anti-parallel
Strand 4	E	238	239	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	217	218	first strand
Strand 2	R	223	224	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	189	196	first strand
Strand 2	A	199	206	anti-parallel
Strand 3	A	40	44	parallel
Strand 4	A	225	231	parallel
Strand 5	A	258	264	parallel
Strand 6	A	331	335	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9D0A

Analysis of interatomic Contacts of Structural Units in PDB entry:
9D0A