Analysis of interatomic Contacts of Structural Units in PDB entry:
9D0T

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9D0T entry

There are 12 chains in PDB entry 9D0T (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 9	ASP 252
B	TYR 5	LEU 250
C	THR 10	ASP 248
D	MET 1	LYS 249
E	MET 1	GLU 250
F	MET 1	ILE 234
G	ILE 4	ASP 250
I	ALA 2	ASN 248
J	SER 6	MET 202
K	MET 1	PHE 195
O	LEU 72	ALA 2143
P	ASN 48	ILE 148

There are179 helices in PDB entry 9D0T. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	15	Right-handed 310
Helix 2	AA2	A	25	34	Right-handed alpha
Helix 3	AA3	A	35	37	Right-handed 310
Helix 4	AA4	A	65	69	Right-handed 310
Helix 5	AA5	A	86	109	Right-handed alpha
Helix 6	AA6	A	113	129	Right-handed alpha
Helix 7	AA7	A	174	190	Right-handed alpha
Helix 8	AA8	A	198	215	Right-handed alpha
Helix 9	AA9	A	237	252	Right-handed alpha
Helix 10	AB1	B	19	30	Right-handed alpha
Helix 11	AB2	B	57	61	Right-handed 310
Helix 12	AB3	B	78	96	Right-handed alpha
Helix 13	AB4	B	97	102	Right-handed alpha
Helix 14	AB5	B	106	124	Right-handed alpha
Helix 15	AB6	B	167	179	Right-handed alpha
Helix 16	AB7	B	184	199	Right-handed alpha
Helix 17	AB8	B	219	222	Right-handed 310
Helix 18	AB9	B	239	249	Right-handed alpha
Helix 19	AC1	C	19	30	Right-handed alpha
Helix 20	AC2	C	80	103	Right-handed alpha
Helix 21	AC3	C	107	125	Right-handed alpha
Helix 22	AC4	C	168	180	Right-handed alpha
Helix 23	AC5	C	185	200	Right-handed alpha
Helix 24	AC6	C	207	209	Right-handed 310
Helix 25	AC7	C	231	240	Right-handed alpha
Helix 26	AC8	D	20	28	Right-handed alpha
Helix 27	AC9	D	78	101	Right-handed alpha
Helix 28	AD1	D	105	120	Right-handed alpha
Helix 29	AD2	D	167	179	Right-handed alpha
Helix 30	AD3	D	187	201	Right-handed alpha
Helix 31	AD4	D	206	210	Right-handed 310
Helix 32	AD5	D	225	246	Right-handed alpha
Helix 33	AD6	E	21	29	Right-handed alpha
Helix 34	AD7	E	30	34	Right-handed 310
Helix 35	AD8	E	84	104	Right-handed alpha
Helix 36	AD9	E	108	123	Right-handed alpha
Helix 37	AE1	E	175	187	Right-handed alpha
Helix 38	AE2	E	192	207	Right-handed alpha
Helix 39	AE3	E	232	249	Right-handed alpha
Helix 40	AE4	F	19	28	Right-handed alpha
Helix 41	AE5	F	77	99	Right-handed alpha
Helix 42	AE6	F	104	122	Right-handed alpha
Helix 43	AE7	F	165	180	Right-handed alpha
Helix 44	AE8	F	185	201	Right-handed alpha
Helix 45	AE9	F	228	231	Right-handed 310
Helix 46	AF1	G	21	33	Right-handed alpha
Helix 47	AF2	G	81	104	Right-handed alpha
Helix 48	AF3	G	108	122	Right-handed alpha
Helix 49	AF4	G	123	125	Right-handed 310
Helix 50	AF5	G	168	183	Right-handed alpha
Helix 51	AF6	G	188	204	Right-handed alpha
Helix 52	AF7	G	205	208	Right-handed 310
Helix 53	AF8	G	233	248	Right-handed alpha
Helix 54	AF9	I	8	18	Right-handed alpha
Helix 55	AG1	I	77	100	Right-handed alpha
Helix 56	AG2	I	104	119	Right-handed alpha
Helix 57	AG3	I	159	171	Right-handed alpha
Helix 58	AG4	I	176	192	Right-handed alpha
Helix 59	AG5	J	56	79	Right-handed alpha
Helix 60	AG6	J	83	97	Right-handed alpha
Helix 61	AG7	J	142	154	Right-handed alpha
Helix 62	AG8	J	159	176	Right-handed alpha
Helix 63	AG9	K	51	72	Right-handed alpha
Helix 64	AH1	K	76	90	Right-handed alpha
Helix 65	AH2	K	136	148	Right-handed alpha
Helix 66	AH3	K	153	172	Right-handed alpha
Helix 67	AH4	O	80	89	Right-handed alpha
Helix 68	AH5	O	96	104	Right-handed alpha
Helix 69	AH6	O	121	126	Right-handed 310
Helix 70	AH7	O	132	153	Right-handed alpha
Helix 71	AH8	O	239	251	Right-handed alpha
Helix 72	AH9	O	256	271	Right-handed alpha
Helix 73	AI1	O	279	291	Right-handed alpha
Helix 74	AI2	O	299	308	Right-handed alpha
Helix 75	AI3	O	313	322	Right-handed alpha
Helix 76	AI4	O	328	332	Right-handed 310
Helix 77	AI5	O	338	356	Right-handed alpha
Helix 78	AI6	O	357	359	Right-handed 310
Helix 79	AI7	O	364	377	Right-handed alpha
Helix 80	AI8	O	379	381	Right-handed 310
Helix 81	AI9	O	382	394	Right-handed alpha
Helix 82	AJ1	O	403	406	Right-handed 310
Helix 83	AJ2	O	407	415	Right-handed alpha
Helix 84	AJ3	O	421	444	Right-handed alpha
Helix 85	AJ4	O	464	481	Right-handed alpha
Helix 86	AJ5	O	487	497	Right-handed alpha
Helix 87	AJ6	O	504	523	Right-handed alpha
Helix 88	AJ7	O	530	557	Right-handed alpha
Helix 89	AJ8	O	567	586	Right-handed alpha
Helix 90	AJ9	O	590	599	Right-handed alpha
Helix 91	AK1	O	599	607	Right-handed alpha
Helix 92	AK2	O	612	628	Right-handed alpha
Helix 93	AK3	O	634	655	Right-handed alpha
Helix 94	AK4	O	657	660	Right-handed 310
Helix 95	AK5	O	661	672	Right-handed alpha
Helix 96	AK6	O	677	694	Right-handed alpha
Helix 97	AK7	O	708	713	Right-handed alpha
Helix 98	AK8	O	713	726	Right-handed alpha
Helix 99	AK9	O	736	746	Right-handed alpha
Helix 100	AL1	O	747	749	Right-handed 310
Helix 101	AL2	O	750	765	Right-handed alpha
Helix 102	AL3	O	766	768	Right-handed 310
Helix 103	AL4	O	771	789	Right-handed alpha
Helix 104	AL5	O	790	807	Right-handed alpha
Helix 105	AL6	O	818	832	Right-handed alpha
Helix 106	AL7	O	835	853	Right-handed alpha
Helix 107	AL8	O	865	867	Right-handed 310
Helix 108	AL9	O	868	884	Right-handed alpha
Helix 109	AM1	O	885	891	Right-handed 310
Helix 110	AM2	O	892	907	Right-handed alpha
Helix 111	AM3	O	909	929	Right-handed alpha
Helix 112	AM4	O	938	942	Right-handed 310
Helix 113	AM5	O	956	960	Right-handed 310
Helix 114	AM6	O	973	998	Right-handed alpha
Helix 115	AM7	O	1007	1024	Right-handed alpha
Helix 116	AM8	O	1025	1029	Right-handed 310
Helix 117	AM9	O	1031	1037	Right-handed 310
Helix 118	AN1	O	1166	1194	Right-handed alpha
Helix 119	AN2	O	1198	1214	Right-handed alpha
Helix 120	AN3	O	1230	1239	Right-handed alpha
Helix 121	AN4	O	1248	1266	Right-handed alpha
Helix 122	AN5	O	1276	1289	Right-handed alpha
Helix 123	AN6	O	1292	1310	Right-handed alpha
Helix 124	AN7	O	1312	1331	Right-handed alpha
Helix 125	AN8	O	1336	1345	Right-handed alpha
Helix 126	AN9	O	1346	1356	Right-handed alpha
Helix 127	AO1	O	1359	1370	Right-handed alpha
Helix 128	AO2	O	1379	1390	Right-handed alpha
Helix 129	AO3	O	1403	1411	Right-handed 310
Helix 130	AO4	O	1415	1418	Right-handed 310
Helix 131	AO5	O	1419	1453	Right-handed alpha
Helix 132	AO6	O	1459	1472	Right-handed alpha
Helix 133	AO7	O	1480	1489	Right-handed alpha
Helix 134	AO8	O	1490	1494	Right-handed 310
Helix 135	AO9	O	1495	1519	Right-handed alpha
Helix 136	AP1	O	1522	1528	Right-handed 310
Helix 137	AP2	O	1545	1554	Right-handed alpha
Helix 138	AP3	O	1592	1606	Right-handed alpha
Helix 139	AP4	O	1607	1622	Right-handed alpha
Helix 140	AP5	O	1629	1645	Right-handed alpha
Helix 141	AP6	O	1651	1663	Right-handed alpha
Helix 142	AP7	O	1667	1684	Right-handed alpha
Helix 143	AP8	O	1685	1687	Right-handed 310
Helix 144	AP9	O	1689	1709	Right-handed alpha
Helix 145	AQ1	O	1713	1727	Right-handed alpha
Helix 146	AQ2	O	1732	1736	Right-handed 310
Helix 147	AQ3	O	1738	1745	Right-handed alpha
Helix 148	AQ4	O	1758	1775	Right-handed alpha
Helix 149	AQ5	O	1781	1788	Right-handed alpha
Helix 150	AQ6	O	1795	1813	Right-handed alpha
Helix 151	AQ7	O	1819	1829	Right-handed alpha
Helix 152	AQ8	O	1842	1857	Right-handed alpha
Helix 153	AQ9	O	1858	1863	Right-handed 310
Helix 154	AR1	O	1867	1872	Right-handed alpha
Helix 155	AR2	O	1874	1891	Right-handed alpha
Helix 156	AR3	O	1892	1894	Right-handed 310
Helix 157	AR4	O	1895	1900	Right-handed alpha
Helix 158	AR5	O	1901	1903	Right-handed 310
Helix 159	AR6	O	1917	1924	Right-handed alpha
Helix 160	AR7	O	1927	1935	Right-handed alpha
Helix 161	AR8	O	1941	1952	Right-handed alpha
Helix 162	AR9	O	1963	1978	Right-handed alpha
Helix 163	AS1	O	1983	1997	Right-handed alpha
Helix 164	AS2	O	2004	2020	Right-handed alpha
Helix 165	AS3	O	2023	2038	Right-handed alpha
Helix 166	AS4	O	2045	2050	Right-handed alpha
Helix 167	AS5	O	2051	2054	Right-handed 310
Helix 168	AS6	O	2056	2071	Right-handed alpha
Helix 169	AS7	O	2080	2094	Right-handed alpha
Helix 170	AS8	O	2097	2114	Right-handed alpha
Helix 171	AS9	O	2117	2122	Right-handed alpha
Helix 172	AT1	O	2123	2125	Right-handed 310
Helix 173	AT2	O	2128	2133	Right-handed alpha
Helix 174	AT3	P	51	58	Right-handed alpha
Helix 175	AT4	P	59	77	Right-handed alpha
Helix 176	AT5	P	78	95	Right-handed alpha
Helix 177	AT6	P	105	112	Right-handed alpha
Helix 178	AT7	P	118	123	Right-handed alpha
Helix 179	AT8	P	139	147	Right-handed alpha

There are 22 sheets in PDB entry 9D0T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	168	171	first strand
Strand 2	A	42	46	anti-parallel
Strand 3	A	51	56	anti-parallel
Strand 4	A	223	229	anti-parallel
Strand 5	A	232	236	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	74	first strand
Strand 2	A	79	84	anti-parallel
Strand 3	A	140	147	anti-parallel
Strand 4	A	151	157	anti-parallel
Strand 5	A	163	166	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	164	first strand
Strand 2	B	34	38	anti-parallel
Strand 3	B	43	48	anti-parallel
Strand 4	B	209	214	anti-parallel
Strand 5	B	235	237	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	68	first strand
Strand 2	B	71	77	anti-parallel
Strand 3	B	132	140	anti-parallel
Strand 4	B	144	150	anti-parallel
Strand 5	B	156	158	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	224	225	first strand
Strand 2	I	213	216	parallel
Strand 3	I	202	208	anti-parallel
Strand 4	I	40	46	anti-parallel
Strand 5	I	32	37	anti-parallel
Strand 6	I	153	156	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	162	166	first strand
Strand 2	C	34	39	anti-parallel
Strand 3	C	43	49	anti-parallel
Strand 4	C	211	217	anti-parallel
Strand 5	C	226	229	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	66	70	first strand
Strand 2	C	73	79	anti-parallel
Strand 3	C	133	139	anti-parallel
Strand 4	C	146	151	anti-parallel
Strand 5	C	157	160	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	161	164	first strand
Strand 2	D	32	37	anti-parallel
Strand 3	D	42	47	anti-parallel
Strand 4	D	212	215	anti-parallel
Strand 5	D	220	223	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	64	68	first strand
Strand 2	D	71	77	anti-parallel
Strand 3	D	131	138	anti-parallel
Strand 4	D	145	151	anti-parallel
Strand 5	D	155	158	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	169	172	first strand
Strand 2	E	37	42	anti-parallel
Strand 3	E	45	51	anti-parallel
Strand 4	E	217	223	anti-parallel
Strand 5	E	227	230	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	67	71	first strand
Strand 2	E	74	80	anti-parallel
Strand 3	E	140	147	anti-parallel
Strand 4	E	153	155	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	156	158	first strand
Strand 2	E	164	165	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	158	161	first strand
Strand 2	F	35	39	anti-parallel
Strand 3	F	44	49	anti-parallel
Strand 4	F	211	217	anti-parallel
Strand 5	F	220	226	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	63	67	first strand
Strand 2	F	70	76	anti-parallel
Strand 3	F	130	138	anti-parallel
Strand 4	F	141	148	anti-parallel
Strand 5	F	152	155	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	162	165	first strand
Strand 2	G	37	41	anti-parallel
Strand 3	G	45	54	anti-parallel
Strand 4	G	211	220	anti-parallel
Strand 5	G	228	230	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	67	70	first strand
Strand 2	G	74	80	anti-parallel
Strand 3	G	134	142	anti-parallel
Strand 4	G	145	151	anti-parallel
Strand 5	G	157	159	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	63	67	first strand
Strand 2	I	70	76	anti-parallel
Strand 3	I	125	133	anti-parallel
Strand 4	I	136	142	anti-parallel
Strand 5	I	148	150	anti-parallel
Strand 6	I	243	246	first strand

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	136	139	first strand
Strand 2	J	11	17	anti-parallel
Strand 3	J	20	26	anti-parallel
Strand 4	J	185	191	anti-parallel
Strand 5	J	195	200	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	43	46	first strand
Strand 2	J	49	52	anti-parallel
Strand 3	J	108	112	anti-parallel
Strand 4	J	119	124	anti-parallel
Strand 5	J	130	132	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	130	133	first strand
Strand 2	K	4	8	anti-parallel
Strand 3	K	13	18	anti-parallel
Strand 4	K	179	185	anti-parallel
Strand 5	K	188	191	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	35	39	first strand
Strand 2	K	42	48	anti-parallel
Strand 3	K	100	108	anti-parallel
Strand 4	K	113	119	anti-parallel
Strand 5	K	125	127	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	1536	1540	first strand
Strand 2	O	1578	1582	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9D0T

Analysis of interatomic Contacts of Structural Units in PDB entry:
9D0T