Analysis of interatomic Contacts of Structural Units in PDB entry:
9D18

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9D18 entry

There are 8 chains in PDB entry 9D18 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 19	ASP 1056
B	GLN 19	ASP 1056
C	GLN 19	ASP 1056
D	GLN 19	ASP 1056
E	PHE 2	LYS 235
F	ARG 34	LYS 235
G	ARG 34	LYS 235
H	ARG 34	LYS 235

There are193 helices in PDB entry 9D18. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	21	54	Right-handed alpha
Helix 2	AA2	A	92	106	Right-handed alpha
Helix 3	AA3	A	109	134	Right-handed alpha
Helix 4	AA4	A	143	146	Right-handed 310
Helix 5	AA5	A	147	171	Right-handed alpha
Helix 6	AA6	A	173	179	Right-handed alpha
Helix 7	AA7	A	180	190	Right-handed alpha
Helix 8	AA8	A	190	200	Right-handed alpha
Helix 9	AA9	A	206	215	Right-handed 310
Helix 10	AB1	A	216	224	Right-handed alpha
Helix 11	AB2	A	229	259	Right-handed alpha
Helix 12	AB3	A	261	265	Right-handed 310
Helix 13	AB4	A	273	286	Right-handed alpha
Helix 14	AB5	A	297	326	Right-handed alpha
Helix 15	AB6	A	352	364	Right-handed alpha
Helix 16	AB7	A	384	394	Right-handed alpha
Helix 17	AB8	A	407	414	Right-handed alpha
Helix 18	AB9	A	432	451	Right-handed alpha
Helix 19	AC1	A	463	470	Right-handed alpha
Helix 20	AC2	A	486	500	Right-handed alpha
Helix 21	AC3	A	502	510	Right-handed alpha
Helix 22	AC4	A	523	533	Right-handed alpha
Helix 23	AC5	A	542	546	Right-handed 310
Helix 24	AC6	A	549	558	Right-handed alpha
Helix 25	AC7	A	601	610	Right-handed alpha
Helix 26	AC8	A	699	704	Right-handed alpha
Helix 27	AC9	A	706	713	Right-handed alpha
Helix 28	AD1	A	734	742	Right-handed alpha
Helix 29	AD2	A	747	751	Right-handed 310
Helix 30	AD3	A	759	764	Right-handed alpha
Helix 31	AD4	A	765	770	Right-handed 310
Helix 32	AD5	A	785	792	Right-handed alpha
Helix 33	AD6	A	793	797	Right-handed 310
Helix 34	AD7	A	817	829	Right-handed alpha
Helix 35	AD8	A	872	876	Right-handed 310
Helix 36	AD9	A	884	891	Right-handed 310
Helix 37	AE1	A	902	905	Right-handed 310
Helix 38	AE2	A	906	911	Right-handed alpha
Helix 39	AE3	A	918	921	Right-handed 310
Helix 40	AE4	A	922	930	Right-handed alpha
Helix 41	AE5	A	931	943	Right-handed alpha
Helix 42	AE6	A	946	957	Right-handed alpha
Helix 43	AE7	A	965	971	Right-handed alpha
Helix 44	AE8	A	995	1008	Right-handed alpha
Helix 45	AE9	B	21	54	Right-handed alpha
Helix 46	AF1	B	92	106	Right-handed alpha
Helix 47	AF2	B	109	134	Right-handed alpha
Helix 48	AF3	B	143	146	Right-handed 310
Helix 49	AF4	B	147	171	Right-handed alpha
Helix 50	AF5	B	173	179	Right-handed alpha
Helix 51	AF6	B	180	190	Right-handed alpha
Helix 52	AF7	B	190	200	Right-handed alpha
Helix 53	AF8	B	206	215	Right-handed 310
Helix 54	AF9	B	216	224	Right-handed alpha
Helix 55	AG1	B	229	259	Right-handed alpha
Helix 56	AG2	B	261	265	Right-handed 310
Helix 57	AG3	B	273	286	Right-handed alpha
Helix 58	AG4	B	297	326	Right-handed alpha
Helix 59	AG5	B	352	364	Right-handed alpha
Helix 60	AG6	B	384	394	Right-handed alpha
Helix 61	AG7	B	407	414	Right-handed alpha
Helix 62	AG8	B	432	451	Right-handed alpha
Helix 63	AG9	B	463	470	Right-handed alpha
Helix 64	AH1	B	486	500	Right-handed alpha
Helix 65	AH2	B	502	510	Right-handed alpha
Helix 66	AH3	B	523	533	Right-handed alpha
Helix 67	AH4	B	542	546	Right-handed 310
Helix 68	AH5	B	549	558	Right-handed alpha
Helix 69	AH6	B	601	610	Right-handed alpha
Helix 70	AH7	B	699	704	Right-handed alpha
Helix 71	AH8	B	706	713	Right-handed alpha
Helix 72	AH9	B	734	742	Right-handed alpha
Helix 73	AI1	B	747	751	Right-handed 310
Helix 74	AI2	B	759	764	Right-handed alpha
Helix 75	AI3	B	765	770	Right-handed 310
Helix 76	AI4	B	785	792	Right-handed alpha
Helix 77	AI5	B	793	797	Right-handed 310
Helix 78	AI6	B	817	829	Right-handed alpha
Helix 79	AI7	B	872	876	Right-handed 310
Helix 80	AI8	B	884	891	Right-handed 310
Helix 81	AI9	B	902	905	Right-handed 310
Helix 82	AJ1	B	906	911	Right-handed alpha
Helix 83	AJ2	B	918	921	Right-handed 310
Helix 84	AJ3	B	922	930	Right-handed alpha
Helix 85	AJ4	B	931	943	Right-handed alpha
Helix 86	AJ5	B	946	957	Right-handed alpha
Helix 87	AJ6	B	965	971	Right-handed alpha
Helix 88	AJ7	B	995	1008	Right-handed alpha
Helix 89	AJ8	C	21	54	Right-handed alpha
Helix 90	AJ9	C	92	106	Right-handed alpha
Helix 91	AK1	C	109	134	Right-handed alpha
Helix 92	AK2	C	143	146	Right-handed 310
Helix 93	AK3	C	147	171	Right-handed alpha
Helix 94	AK4	C	173	179	Right-handed alpha
Helix 95	AK5	C	180	190	Right-handed alpha
Helix 96	AK6	C	190	200	Right-handed alpha
Helix 97	AK7	C	206	215	Right-handed 310
Helix 98	AK8	C	216	224	Right-handed alpha
Helix 99	AK9	C	229	259	Right-handed alpha
Helix 100	AL1	C	261	265	Right-handed 310
Helix 101	AL2	C	273	286	Right-handed alpha
Helix 102	AL3	C	297	326	Right-handed alpha
Helix 103	AL4	C	352	364	Right-handed alpha
Helix 104	AL5	C	384	394	Right-handed alpha
Helix 105	AL6	C	407	414	Right-handed alpha
Helix 106	AL7	C	432	451	Right-handed alpha
Helix 107	AL8	C	463	470	Right-handed alpha
Helix 108	AL9	C	486	500	Right-handed alpha
Helix 109	AM1	C	502	510	Right-handed alpha
Helix 110	AM2	C	523	533	Right-handed alpha
Helix 111	AM3	C	542	546	Right-handed 310
Helix 112	AM4	C	549	558	Right-handed alpha
Helix 113	AM5	C	601	610	Right-handed alpha
Helix 114	AM6	C	699	704	Right-handed alpha
Helix 115	AM7	C	706	713	Right-handed alpha
Helix 116	AM8	C	734	742	Right-handed alpha
Helix 117	AM9	C	747	751	Right-handed 310
Helix 118	AN1	C	759	764	Right-handed alpha
Helix 119	AN2	C	765	770	Right-handed 310
Helix 120	AN3	C	785	792	Right-handed alpha
Helix 121	AN4	C	793	797	Right-handed 310
Helix 122	AN5	C	817	829	Right-handed alpha
Helix 123	AN6	C	872	876	Right-handed 310
Helix 124	AN7	C	884	891	Right-handed 310
Helix 125	AN8	C	902	905	Right-handed 310
Helix 126	AN9	C	906	911	Right-handed alpha
Helix 127	AO1	C	918	921	Right-handed 310
Helix 128	AO2	C	922	930	Right-handed alpha
Helix 129	AO3	C	931	943	Right-handed alpha
Helix 130	AO4	C	946	957	Right-handed alpha
Helix 131	AO5	C	965	971	Right-handed alpha
Helix 132	AO6	C	995	1008	Right-handed alpha
Helix 133	AO7	D	21	54	Right-handed alpha
Helix 134	AO8	D	92	106	Right-handed alpha
Helix 135	AO9	D	109	134	Right-handed alpha
Helix 136	AP1	D	143	146	Right-handed 310
Helix 137	AP2	D	147	171	Right-handed alpha
Helix 138	AP3	D	173	179	Right-handed alpha
Helix 139	AP4	D	180	190	Right-handed alpha
Helix 140	AP5	D	190	200	Right-handed alpha
Helix 141	AP6	D	206	215	Right-handed 310
Helix 142	AP7	D	216	224	Right-handed alpha
Helix 143	AP8	D	229	259	Right-handed alpha
Helix 144	AP9	D	261	265	Right-handed 310
Helix 145	AQ1	D	273	286	Right-handed alpha
Helix 146	AQ2	D	297	326	Right-handed alpha
Helix 147	AQ3	D	352	364	Right-handed alpha
Helix 148	AQ4	D	384	394	Right-handed alpha
Helix 149	AQ5	D	407	414	Right-handed alpha
Helix 150	AQ6	D	432	451	Right-handed alpha
Helix 151	AQ7	D	463	470	Right-handed alpha
Helix 152	AQ8	D	486	500	Right-handed alpha
Helix 153	AQ9	D	502	510	Right-handed alpha
Helix 154	AR1	D	523	533	Right-handed alpha
Helix 155	AR2	D	542	546	Right-handed 310
Helix 156	AR3	D	549	558	Right-handed alpha
Helix 157	AR4	D	601	610	Right-handed alpha
Helix 158	AR5	D	699	704	Right-handed alpha
Helix 159	AR6	D	706	713	Right-handed alpha
Helix 160	AR7	D	734	742	Right-handed alpha
Helix 161	AR8	D	747	751	Right-handed 310
Helix 162	AR9	D	759	764	Right-handed alpha
Helix 163	AS1	D	765	770	Right-handed 310
Helix 164	AS2	D	785	792	Right-handed alpha
Helix 165	AS3	D	793	797	Right-handed 310
Helix 166	AS4	D	817	829	Right-handed alpha
Helix 167	AS5	D	872	876	Right-handed 310
Helix 168	AS6	D	884	891	Right-handed 310
Helix 169	AS7	D	902	905	Right-handed 310
Helix 170	AS8	D	906	911	Right-handed alpha
Helix 171	AS9	D	918	921	Right-handed 310
Helix 172	AT1	D	922	930	Right-handed alpha
Helix 173	AT2	D	931	943	Right-handed alpha
Helix 174	AT3	D	946	957	Right-handed alpha
Helix 175	AT4	D	965	971	Right-handed alpha
Helix 176	AT5	D	995	1008	Right-handed alpha
Helix 177	AT6	E	6	10	Right-handed 310
Helix 178	AT7	E	39	78	Right-handed alpha
Helix 179	AT8	E	133	140	Right-handed alpha
Helix 180	AT9	E	152	169	Right-handed alpha
Helix 181	AU1	E	196	234	Right-handed alpha
Helix 182	AU2	F	39	78	Right-handed alpha
Helix 183	AU3	F	133	140	Right-handed alpha
Helix 184	AU4	F	152	169	Right-handed alpha
Helix 185	AU5	F	196	234	Right-handed alpha
Helix 186	AU6	G	39	78	Right-handed alpha
Helix 187	AU7	G	133	140	Right-handed alpha
Helix 188	AU8	G	152	169	Right-handed alpha
Helix 189	AU9	G	196	234	Right-handed alpha
Helix 190	AV1	H	39	78	Right-handed alpha
Helix 191	AV2	H	133	140	Right-handed alpha
Helix 192	AV3	H	152	169	Right-handed alpha
Helix 193	AV4	H	196	234	Right-handed alpha

There are 32 sheets in PDB entry 9D18. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	139	141	first strand
Strand 2	A	201	203	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	398	402	first strand
Strand 2	A	374	379	parallel
Strand 3	A	344	349	parallel
Strand 4	A	422	425	parallel
Strand 5	A	456	460	parallel
Strand 6	A	482	485	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	535	536	first strand
Strand 2	A	594	599	anti-parallel
Strand 3	A	539	540	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	535	536	first strand
Strand 2	A	594	599	anti-parallel
Strand 3	A	564	568	anti-parallel
Strand 4	A	580	581	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	686	687	first strand
Strand 2	A	961	962	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	776	779	first strand
Strand 2	A	754	757	parallel
Strand 3	A	719	724	parallel
Strand 4	A	799	804	parallel
Strand 5	A	878	882	parallel
Strand 6	A	914	916	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	976	981	first strand
Strand 2	A	1048	1053	anti-parallel
Strand 3	A	1010	1017	anti-parallel
Strand 4	A	1031	1035	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	139	141	first strand
Strand 2	B	201	203	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	398	402	first strand
Strand 2	B	374	379	parallel
Strand 3	B	344	349	parallel
Strand 4	B	422	425	parallel
Strand 5	B	456	460	parallel
Strand 6	B	482	485	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	535	536	first strand
Strand 2	B	594	599	anti-parallel
Strand 3	B	539	540	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	535	536	first strand
Strand 2	B	594	599	anti-parallel
Strand 3	B	564	568	anti-parallel
Strand 4	B	580	581	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	686	687	first strand
Strand 2	B	961	962	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	776	779	first strand
Strand 2	B	754	757	parallel
Strand 3	B	719	724	parallel
Strand 4	B	799	804	parallel
Strand 5	B	878	882	parallel
Strand 6	B	914	916	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	976	981	first strand
Strand 2	B	1048	1053	anti-parallel
Strand 3	B	1010	1017	anti-parallel
Strand 4	B	1031	1035	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	139	141	first strand
Strand 2	C	201	203	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	398	402	first strand
Strand 2	C	374	379	parallel
Strand 3	C	344	349	parallel
Strand 4	C	422	425	parallel
Strand 5	C	456	460	parallel
Strand 6	C	482	485	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	535	536	first strand
Strand 2	C	594	599	anti-parallel
Strand 3	C	539	540	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	535	536	first strand
Strand 2	C	594	599	anti-parallel
Strand 3	C	564	568	anti-parallel
Strand 4	C	580	581	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	686	687	first strand
Strand 2	C	961	962	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	776	779	first strand
Strand 2	C	754	757	parallel
Strand 3	C	719	724	parallel
Strand 4	C	799	804	parallel
Strand 5	C	878	882	parallel
Strand 6	C	914	916	parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	976	981	first strand
Strand 2	C	1048	1053	anti-parallel
Strand 3	C	1010	1017	anti-parallel
Strand 4	C	1031	1035	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	139	141	first strand
Strand 2	D	201	203	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	398	402	first strand
Strand 2	D	374	379	parallel
Strand 3	D	344	349	parallel
Strand 4	D	422	425	parallel
Strand 5	D	456	460	parallel
Strand 6	D	482	485	parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	535	536	first strand
Strand 2	D	594	599	anti-parallel
Strand 3	D	539	540	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	535	536	first strand
Strand 2	D	594	599	anti-parallel
Strand 3	D	564	568	anti-parallel
Strand 4	D	580	581	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	686	687	first strand
Strand 2	D	961	962	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	776	779	first strand
Strand 2	D	754	757	parallel
Strand 3	D	719	724	parallel
Strand 4	D	799	804	parallel
Strand 5	D	878	882	parallel
Strand 6	D	914	916	parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	976	981	first strand
Strand 2	D	1048	1053	anti-parallel
Strand 3	D	1010	1017	anti-parallel
Strand 4	D	1031	1035	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	80	83	first strand
Strand 2	E	177	181	anti-parallel
Strand 3	E	185	190	anti-parallel
Strand 4	E	128	131	parallel
Strand 5	E	108	120	anti-parallel
Strand 6	E	85	100	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	80	83	first strand
Strand 2	F	177	181	anti-parallel
Strand 3	F	185	190	anti-parallel
Strand 4	F	128	131	parallel
Strand 5	F	108	120	anti-parallel
Strand 6	F	85	100	anti-parallel

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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	80	83	first strand
Strand 2	G	177	181	anti-parallel
Strand 3	G	185	190	anti-parallel
Strand 4	G	128	131	parallel
Strand 5	G	108	120	anti-parallel
Strand 6	G	85	100	anti-parallel

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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	80	83	first strand
Strand 2	H	177	181	anti-parallel
Strand 3	H	185	190	anti-parallel
Strand 4	H	128	131	parallel
Strand 5	H	108	120	anti-parallel
Strand 6	H	85	100	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9D18

Analysis of interatomic Contacts of Structural Units in PDB entry:
9D18