Analysis of interatomic Contacts of Structural Units in PDB entry:
9D1V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9D1V entry

There are 4 chains in PDB entry 9D1V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 14	PHE 200
B	SER 13	HIS 195
C	GLN 12	GLN 196
D	LEU 14	HIS 195

There are 9 helices in PDB entry 9D1V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	172	177	Right-handed 310
Helix 2	AA2	B	80	84	Right-handed 310
Helix 3	AA3	B	172	177	Right-handed 310
Helix 4	AA4	C	24	26	Right-handed 310
Helix 5	AA5	C	40	44	Right-handed 310
Helix 6	AA6	C	80	84	Right-handed 310
Helix 7	AA7	C	172	177	Right-handed 310
Helix 8	AA8	D	40	44	Right-handed 310
Helix 9	AA9	D	172	177	Right-handed 310

There are 16 sheets in PDB entry 9D1V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	33	first strand
Strand 2	A	17	23	anti-parallel
Strand 3	A	50	55	anti-parallel
Strand 4	A	76	78	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	73	first strand
Strand 2	A	58	63	anti-parallel
Strand 3	A	95	98	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	117	124	first strand
Strand 2	A	107	113	anti-parallel
Strand 3	A	142	145	anti-parallel
Strand 4	A	168	170	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	159	165	first strand
Strand 2	A	149	155	anti-parallel
Strand 3	A	185	189	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	33	first strand
Strand 2	B	17	23	anti-parallel
Strand 3	B	50	55	anti-parallel
Strand 4	B	76	78	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	73	first strand
Strand 2	B	58	63	anti-parallel
Strand 3	B	95	98	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	117	124	first strand
Strand 2	B	107	113	anti-parallel
Strand 3	B	142	145	anti-parallel
Strand 4	B	168	170	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	165	first strand
Strand 2	B	150	155	anti-parallel
Strand 3	B	185	188	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	33	first strand
Strand 2	C	17	23	anti-parallel
Strand 3	C	50	55	anti-parallel
Strand 4	C	76	78	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	70	73	first strand
Strand 2	C	58	61	anti-parallel
Strand 3	C	95	98	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	117	124	first strand
Strand 2	C	107	113	anti-parallel
Strand 3	C	142	145	anti-parallel
Strand 4	C	168	170	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	159	165	first strand
Strand 2	C	150	155	anti-parallel
Strand 3	C	185	188	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	30	33	first strand
Strand 2	D	17	21	anti-parallel
Strand 3	D	50	55	anti-parallel
Strand 4	D	76	78	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	67	73	first strand
Strand 2	D	58	63	anti-parallel
Strand 3	D	95	98	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	117	124	first strand
Strand 2	D	107	113	anti-parallel
Strand 3	D	142	145	anti-parallel
Strand 4	D	168	170	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	165	first strand
Strand 2	D	150	155	anti-parallel
Strand 3	D	185	188	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9D1V

Analysis of interatomic Contacts of Structural Units in PDB entry:
9D1V