Analysis of interatomic Contacts of Structural Units in PDB entry:
9D22

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9D22 entry

There are 17 chains in PDB entry 9D22 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
a	T 1	T 45
C	ASN 327	LYS 415
A	ASP 329	ASP 409
B	HIS 326	LYS 415
D	MET 328	GLU 410
E	PHE 321	LYS 415
F	SER 320	SER 418
G	HIS 326	SER 418
H	ASN 327	LYS 415
I	PHE 325	VAL 408
J	ASN 327	ASP 409
K	ASN 327	VAL 408
b	A 1	A 45
d	A 1	A 54
c	T 1	T 54
f	A 1	A 33
e	T 1	T 33

There are 56 helices in PDB entry 9D22. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	327	331	Right-handed 310
Helix 2	AA2	C	341	351	Right-handed alpha
Helix 3	AA3	C	359	371	Right-handed alpha
Helix 4	AA4	C	372	376	Right-handed 310
Helix 5	AA5	C	377	392	Right-handed alpha
Helix 6	AA6	C	409	415	Right-handed alpha
Helix 7	AA7	A	341	351	Right-handed alpha
Helix 8	AA8	A	359	371	Right-handed alpha
Helix 9	AA9	A	372	376	Right-handed 310
Helix 10	AB1	A	378	392	Right-handed alpha
Helix 11	AB2	B	341	351	Right-handed alpha
Helix 12	AB3	B	359	371	Right-handed alpha
Helix 13	AB4	B	372	376	Right-handed 310
Helix 14	AB5	B	377	392	Right-handed alpha
Helix 15	AB6	B	409	415	Right-handed alpha
Helix 16	AB7	D	341	351	Right-handed alpha
Helix 17	AB8	D	359	371	Right-handed alpha
Helix 18	AB9	D	372	376	Right-handed 310
Helix 19	AC1	D	378	392	Right-handed alpha
Helix 20	AC2	E	329	334	Right-handed alpha
Helix 21	AC3	E	341	351	Right-handed alpha
Helix 22	AC4	E	359	371	Right-handed alpha
Helix 23	AC5	E	372	376	Right-handed 310
Helix 24	AC6	E	377	392	Right-handed alpha
Helix 25	AC7	F	328	334	Right-handed alpha
Helix 26	AC8	F	341	351	Right-handed alpha
Helix 27	AC9	F	359	371	Right-handed alpha
Helix 28	AD1	F	372	376	Right-handed 310
Helix 29	AD2	F	377	392	Right-handed alpha
Helix 30	AD3	F	409	418	Right-handed alpha
Helix 31	AD4	G	327	333	Right-handed 310
Helix 32	AD5	G	341	351	Right-handed alpha
Helix 33	AD6	G	359	371	Right-handed alpha
Helix 34	AD7	G	372	376	Right-handed 310
Helix 35	AD8	G	377	392	Right-handed alpha
Helix 36	AD9	G	409	418	Right-handed alpha
Helix 37	AE1	H	341	351	Right-handed alpha
Helix 38	AE2	H	359	371	Right-handed alpha
Helix 39	AE3	H	372	376	Right-handed 310
Helix 40	AE4	H	377	392	Right-handed alpha
Helix 41	AE5	H	409	415	Right-handed alpha
Helix 42	AE6	I	328	334	Right-handed alpha
Helix 43	AE7	I	341	351	Right-handed alpha
Helix 44	AE8	I	359	371	Right-handed alpha
Helix 45	AE9	I	372	376	Right-handed 310
Helix 46	AF1	I	380	392	Right-handed alpha
Helix 47	AF2	J	328	333	Right-handed alpha
Helix 48	AF3	J	341	351	Right-handed alpha
Helix 49	AF4	J	359	371	Right-handed alpha
Helix 50	AF5	J	372	376	Right-handed 310
Helix 51	AF6	J	377	392	Right-handed alpha
Helix 52	AF7	K	328	334	Right-handed alpha
Helix 53	AF8	K	341	351	Right-handed alpha
Helix 54	AF9	K	359	371	Right-handed alpha
Helix 55	AG1	K	372	376	Right-handed 310
Helix 56	AG2	K	379	392	Right-handed alpha

There are 11 sheets in PDB entry 9D22. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	395	398	first strand
Strand 2	C	405	408	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	395	398	first strand
Strand 2	A	405	408	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	395	398	first strand
Strand 2	B	405	408	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	395	400	first strand
Strand 2	D	403	408	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	357	358	first strand
Strand 2	E	404	408	anti-parallel
Strand 3	E	395	399	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	395	400	first strand
Strand 2	F	403	408	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	395	399	first strand
Strand 2	G	404	408	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	395	400	first strand
Strand 2	H	403	408	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	396	399	first strand
Strand 2	I	404	407	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	395	400	first strand
Strand 2	J	403	408	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	396	400	first strand
Strand 2	K	403	407	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9D22

Analysis of interatomic Contacts of Structural Units in PDB entry:
9D22