Analysis of interatomic Contacts of Structural Units in PDB entry:
9D27


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9D27 entry

There are 5 chains in PDB entry 9D27 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 12THR 123
B
 LEU 12THR 123
C
 LEU 12THR 123
D
 LEU 12THR 123
E
 LEU 12THR 123
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page
There are no helices in PDB entry 9D27

There are 8 sheets in PDB entry 9D27. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
13 16first strand
Strand 2
B
13 16parallel
Strand 3
A
13 16parallel
Strand 4
C
13 16parallel
Strand 5
E
13 16parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
28 32first strand
Strand 2
B
28 32parallel
Strand 3
A
28 32parallel
Strand 4
C
28 32parallel
Strand 5
E
28 32parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
64 68first strand
Strand 2
B
64 68parallel
Strand 3
A
64 68parallel
Strand 4
C
64 68parallel
Strand 5
E
64 68parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
71 75first strand
Strand 2
B
71 75parallel
Strand 3
A
71 75parallel
Strand 4
C
71 75parallel
Strand 5
E
71 75parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
89 99first strand
Strand 2
B
89 99parallel
Strand 3
A
89 99parallel
Strand 4
C
89 99parallel
Strand 5
E
89 99parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
105 107first strand
Strand 2
B
105 107parallel
Strand 3
A
105 107parallel
Strand 4
C
105 107parallel
Strand 5
E
105 107parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
114 115first strand
Strand 2
B
114 115parallel
Strand 3
A
114 115parallel
Strand 4
C
114 115parallel
Strand 5
E
114 115parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
118 122first strand
Strand 2
B
118 122parallel
Strand 3
A
118 122parallel
Strand 4
C
118 122parallel
Strand 5
E
118 122parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il