Analysis of interatomic Contacts of Structural Units in PDB entry:
9D29


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9D29 entry

There are 4 chains in PDB entry 9D29 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 76LEU 604
B
 GLN 76LEU 604
C
 GLN 76LEU 604
D
 GLN 76LEU 604
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are116 helices in PDB entry 9D29. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
81 104Right-handed alpha
Helix 2
AA2
A
108 122Right-handed alpha
Helix 3
AA3
A
124 127Right-handed 310
Helix 4
AA4
A
128 142Right-handed alpha
Helix 5
AA5
A
149 163Right-handed alpha
Helix 6
AA6
A
168 176Right-handed 310
Helix 7
AA7
A
177 181Right-handed 310
Helix 8
AA8
A
189 205Right-handed alpha
Helix 9
AA9
A
211 231Right-handed alpha
Helix 10
AB1
A
235 249Right-handed alpha
Helix 11
AB2
A
254 268Right-handed alpha
Helix 12
AB3
A
269 275Right-handed alpha
Helix 13
AB4
A
277 310Right-handed alpha
Helix 14
AB5
A
311 315Right-handed 310
Helix 15
AB6
A
320 331Right-handed alpha
Helix 16
AB7
A
335 337Right-handed 310
Helix 17
AB8
A
338 361Right-handed alpha
Helix 18
AB9
A
364 378Right-handed alpha
Helix 19
AC1
A
387 413Right-handed alpha
Helix 20
AC2
A
416 440Right-handed alpha
Helix 21
AC3
A
445 457Right-handed alpha
Helix 22
AC4
A
458 469Right-handed alpha
Helix 23
AC5
A
475 480Right-handed alpha
Helix 24
AC6
A
486 502Right-handed alpha
Helix 25
AC7
A
516 525Right-handed alpha
Helix 26
AC8
A
529 553Right-handed alpha
Helix 27
AC9
A
559 579Right-handed alpha
Helix 28
AD1
A
590 599Right-handed alpha
Helix 29
AD2
B
81 102Right-handed alpha
Helix 30
AD3
B
108 122Right-handed alpha
Helix 31
AD4
B
124 127Right-handed 310
Helix 32
AD5
B
128 142Right-handed alpha
Helix 33
AD6
B
142 147Right-handed alpha
Helix 34
AD7
B
149 163Right-handed alpha
Helix 35
AD8
B
168 176Right-handed 310
Helix 36
AD9
B
177 181Right-handed 310
Helix 37
AE1
B
189 205Right-handed alpha
Helix 38
AE2
B
211 231Right-handed alpha
Helix 39
AE3
B
235 249Right-handed alpha
Helix 40
AE4
B
254 268Right-handed alpha
Helix 41
AE5
B
269 275Right-handed alpha
Helix 42
AE6
B
277 310Right-handed alpha
Helix 43
AE7
B
311 315Right-handed 310
Helix 44
AE8
B
321 331Right-handed alpha
Helix 45
AE9
B
335 337Right-handed 310
Helix 46
AF1
B
338 361Right-handed alpha
Helix 47
AF2
B
364 378Right-handed alpha
Helix 48
AF3
B
387 413Right-handed alpha
Helix 49
AF4
B
416 441Right-handed alpha
Helix 50
AF5
B
445 454Right-handed alpha
Helix 51
AF6
B
455 457Right-handed 310
Helix 52
AF7
B
458 469Right-handed alpha
Helix 53
AF8
B
475 480Right-handed alpha
Helix 54
AF9
B
486 501Right-handed alpha
Helix 55
AG1
B
516 525Right-handed alpha
Helix 56
AG2
B
529 554Right-handed alpha
Helix 57
AG3
B
559 580Right-handed alpha
Helix 58
AG4
B
590 599Right-handed alpha
Helix 59
AG5
C
81 104Right-handed alpha
Helix 60
AG6
C
108 122Right-handed alpha
Helix 61
AG7
C
124 127Right-handed 310
Helix 62
AG8
C
128 142Right-handed alpha
Helix 63
AG9
C
142 147Right-handed alpha
Helix 64
AH1
C
149 163Right-handed alpha
Helix 65
AH2
C
168 176Right-handed 310
Helix 66
AH3
C
189 206Right-handed alpha
Helix 67
AH4
C
211 231Right-handed alpha
Helix 68
AH5
C
235 249Right-handed alpha
Helix 69
AH6
C
254 268Right-handed alpha
Helix 70
AH7
C
269 275Right-handed alpha
Helix 71
AH8
C
277 310Right-handed alpha
Helix 72
AH9
C
311 316Right-handed alpha
Helix 73
AI1
C
320 331Right-handed alpha
Helix 74
AI2
C
335 337Right-handed 310
Helix 75
AI3
C
338 361Right-handed alpha
Helix 76
AI4
C
364 378Right-handed alpha
Helix 77
AI5
C
387 413Right-handed alpha
Helix 78
AI6
C
416 440Right-handed alpha
Helix 79
AI7
C
445 457Right-handed alpha
Helix 80
AI8
C
458 469Right-handed alpha
Helix 81
AI9
C
475 483Right-handed alpha
Helix 82
AJ1
C
486 502Right-handed alpha
Helix 83
AJ2
C
503 505Right-handed 310
Helix 84
AJ3
C
506 513Right-handed alpha
Helix 85
AJ4
C
516 525Right-handed alpha
Helix 86
AJ5
C
529 554Right-handed alpha
Helix 87
AJ6
C
559 580Right-handed alpha
Helix 88
AJ7
C
589 599Right-handed alpha
Helix 89
AJ8
D
81 103Right-handed alpha
Helix 90
AJ9
D
108 122Right-handed alpha
Helix 91
AK1
D
124 127Right-handed 310
Helix 92
AK2
D
128 142Right-handed alpha
Helix 93
AK3
D
142 147Right-handed alpha
Helix 94
AK4
D
149 163Right-handed alpha
Helix 95
AK5
D
168 176Right-handed 310
Helix 96
AK6
D
189 205Right-handed alpha
Helix 97
AK7
D
211 231Right-handed alpha
Helix 98
AK8
D
235 249Right-handed alpha
Helix 99
AK9
D
254 268Right-handed alpha
Helix 100
AL1
D
269 275Right-handed alpha
Helix 101
AL2
D
277 310Right-handed alpha
Helix 102
AL3
D
311 315Right-handed 310
Helix 103
AL4
D
321 331Right-handed alpha
Helix 104
AL5
D
335 337Right-handed 310
Helix 105
AL6
D
338 361Right-handed alpha
Helix 106
AL7
D
364 378Right-handed alpha
Helix 107
AL8
D
387 413Right-handed alpha
Helix 108
AL9
D
416 441Right-handed alpha
Helix 109
AM1
D
445 457Right-handed alpha
Helix 110
AM2
D
458 469Right-handed alpha
Helix 111
AM3
D
475 483Right-handed alpha
Helix 112
AM4
D
486 502Right-handed alpha
Helix 113
AM5
D
516 525Right-handed alpha
Helix 114
AM6
D
529 554Right-handed alpha
Helix 115
AM7
D
559 579Right-handed alpha
Helix 116
AM8
D
590 599Right-handed alpha
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There are no sheets in PDB entry 9D29
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