Analysis of interatomic Contacts of Structural Units in PDB entry:
9D2B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9D2B entry

There are 6 chains in PDB entry 9D2B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 MET 1SER 439
B
 MET 1ASP 427
A
 MET 1SER 439
F
 LEU 9GLU 191
G
 VAL 142PRO 160
H
 PRO 156GLU 186
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 75 helices in PDB entry 9D2B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
9 28Right-handed alpha
Helix 2
AA2
C
48 51Right-handed 310
Helix 3
AA3
C
72 81Right-handed alpha
Helix 4
AA4
C
88 92Right-handed 310
Helix 5
AA5
C
102 108Right-handed alpha
Helix 6
AA6
C
110 128Right-handed alpha
Helix 7
AA7
C
144 162Right-handed alpha
Helix 8
AA8
C
182 190Right-handed alpha
Helix 9
AA9
C
190 195Right-handed alpha
Helix 10
AB1
C
206 217Right-handed alpha
Helix 11
AB2
C
223 244Right-handed alpha
Helix 12
AB3
C
251 260Right-handed alpha
Helix 13
AB4
C
287 296Right-handed alpha
Helix 14
AB5
C
297 301Right-handed 310
Helix 15
AB6
C
306 310Right-handed 310
Helix 16
AB7
C
324 337Right-handed alpha
Helix 17
AB8
C
383 399Right-handed alpha
Helix 18
AB9
C
404 411Right-handed alpha
Helix 19
AC1
C
414 437Right-handed alpha
Helix 20
AC2
B
10 29Right-handed alpha
Helix 21
AC3
B
41 46Right-handed alpha
Helix 22
AC4
B
47 49Right-handed 310
Helix 23
AC5
B
69 79Right-handed alpha
Helix 24
AC6
B
86 88Right-handed 310
Helix 25
AC7
B
100 106Right-handed alpha
Helix 26
AC8
B
108 127Right-handed alpha
Helix 27
AC9
B
142 159Right-handed alpha
Helix 28
AD1
B
180 196Right-handed alpha
Helix 29
AD2
B
204 214Right-handed alpha
Helix 30
AD3
B
221 242Right-handed alpha
Helix 31
AD4
B
249 258Right-handed alpha
Helix 32
AD5
B
278 282Right-handed 310
Helix 33
AD6
B
285 294Right-handed alpha
Helix 34
AD7
B
295 299Right-handed 310
Helix 35
AD8
B
304 308Right-handed 310
Helix 36
AD9
B
322 337Right-handed alpha
Helix 37
AE1
B
338 341Right-handed 310
Helix 38
AE2
B
373 390Right-handed alpha
Helix 39
AE3
B
394 401Right-handed alpha
Helix 40
AE4
B
404 427Right-handed alpha
Helix 41
AE5
A
10 29Right-handed alpha
Helix 42
AE6
A
47 51Right-handed 310
Helix 43
AE7
A
72 81Right-handed alpha
Helix 44
AE8
A
88 90Right-handed 310
Helix 45
AE9
A
102 108Right-handed alpha
Helix 46
AF1
A
110 113Right-handed 310
Helix 47
AF2
A
114 127Right-handed alpha
Helix 48
AF3
A
144 161Right-handed alpha
Helix 49
AF4
A
182 190Right-handed alpha
Helix 50
AF5
A
190 195Right-handed alpha
Helix 51
AF6
A
206 216Right-handed alpha
Helix 52
AF7
A
223 244Right-handed alpha
Helix 53
AF8
A
251 260Right-handed alpha
Helix 54
AF9
A
277 282Right-handed alpha
Helix 55
AG1
A
287 296Right-handed alpha
Helix 56
AG2
A
297 301Right-handed 310
Helix 57
AG3
A
306 310Right-handed 310
Helix 58
AG4
A
324 337Right-handed alpha
Helix 59
AG5
A
383 399Right-handed alpha
Helix 60
AG6
A
400 402Right-handed 310
Helix 61
AG7
A
404 410Right-handed alpha
Helix 62
AG8
A
414 437Right-handed alpha
Helix 63
AG9
F
10 23Right-handed alpha
Helix 64
AH1
F
28 33Right-handed alpha
Helix 65
AH2
F
52 68Right-handed alpha
Helix 66
AH3
F
69 76Right-handed alpha
Helix 67
AH4
F
85 107Right-handed alpha
Helix 68
AH5
F
108 110Right-handed 310
Helix 69
AH6
F
115 120Right-handed alpha
Helix 70
AH7
F
122 146Right-handed alpha
Helix 71
AH8
F
147 150Right-handed 310
Helix 72
AH9
F
151 159Right-handed alpha
Helix 73
AI1
F
163 191Right-handed alpha
Helix 74
AI2
G
143 158Right-handed alpha
Helix 75
AI3
H
157 186Right-handed alpha
Back to top of page

There are 9 sheets in PDB entry 9D2B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
65 67first strand
Strand 2
C
4 8parallel
Strand 3
C
134 140parallel
Strand 4
C
165 172parallel
Strand 5
C
200 205parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
53 56first strand
Strand 2
C
60 63anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
269 273first strand
Strand 2
C
373 381anti-parallel
Strand 3
C
312 321anti-parallel
Strand 4
C
351 356parallel
Back to list of sheets
Back to top of page

There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
90 92first strand
Strand 2
B
63 67parallel
Strand 3
B
3 9parallel
Strand 4
B
130 136parallel
Strand 5
B
163 166parallel
Strand 6
B
198 200parallel
Strand 7
B
265 271parallel
Strand 8
B
363 371anti-parallel
Strand 9
B
310 319anti-parallel
Strand 10
B
349 354parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 54first strand
Strand 2
B
58 61anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
169 170first strand
Strand 2
B
202 203parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 94first strand
Strand 2
A
65 69parallel
Strand 3
A
4 9parallel
Strand 4
A
134 140parallel
Strand 5
A
165 172parallel
Strand 6
A
200 205parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 55first strand
Strand 2
A
61 63anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 273first strand
Strand 2
A
373 381anti-parallel
Strand 3
A
312 321anti-parallel
Strand 4
A
351 356parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il