Analysis of interatomic Contacts of Structural Units in PDB entry:
9D2I


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9D2I entry

There are 4 chains in PDB entry 9D2I (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 35THR 1044
P
 A 7 G 23
T
 T 9 T 34
N
 T 10 A 15
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 9D2I. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
50 59Right-handed alpha
Helix 2
AA2
A
63 84Right-handed alpha
Helix 3
AA3
A
108 129Right-handed alpha
Helix 4
AA4
A
198 203Right-handed alpha
Helix 5
AA5
A
226 232Right-handed alpha
Helix 6
AA6
A
233 238Right-handed 310
Helix 7
AA7
A
249 257Right-handed alpha
Helix 8
AA8
A
267 281Right-handed alpha
Helix 9
AA9
A
294 299Right-handed 310
Helix 10
AB1
A
304 313Right-handed alpha
Helix 11
AB2
A
320 327Right-handed 310
Helix 12
AB3
A
330 335Right-handed alpha
Helix 13
AB4
A
336 366Right-handed alpha
Helix 14
AB5
A
368 380Right-handed alpha
Helix 15
AB6
A
386 422Right-handed alpha
Helix 16
AB7
A
426 432Right-handed alpha
Helix 17
AB8
A
432 438Right-handed alpha
Helix 18
AB9
A
463 470Right-handed alpha
Helix 19
AC1
A
486 491Right-handed alpha
Helix 20
AC2
A
516 523Right-handed alpha
Helix 21
AC3
A
529 542Right-handed alpha
Helix 22
AC4
A
543 545Right-handed 310
Helix 23
AC5
A
586 594Right-handed alpha
Helix 24
AC6
A
598 610Right-handed alpha
Helix 25
AC7
A
676 681Right-handed 310
Helix 26
AC8
A
696 708Right-handed alpha
Helix 27
AC9
A
716 721Right-handed alpha
Helix 28
AD1
A
732 742Right-handed alpha
Helix 29
AD2
A
744 758Right-handed alpha
Helix 30
AD3
A
760 772Right-handed alpha
Helix 31
AD4
A
776 792Right-handed alpha
Helix 32
AD5
A
810 822Right-handed alpha
Helix 33
AD6
A
849 881Right-handed alpha
Helix 34
AD7
A
902 926Right-handed alpha
Helix 35
AD8
A
970 977Right-handed alpha
Helix 36
AD9
A
986 995Right-handed alpha
Helix 37
AE1
A
1003 1010Right-handed alpha
Helix 38
AE2
A
1013 1026Right-handed alpha
Helix 39
AE3
A
1028 1044Right-handed alpha
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There are 6 sheets in PDB entry 9D2I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 160first strand
Strand 2
A
147 151anti-parallel
Strand 3
A
193 197anti-parallel
Strand 4
A
182 188anti-parallel
Strand 5
A
167 174anti-parallel
Strand 6
A
220 223parallel
Strand 7
A
245 248parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
383 385first strand
Strand 2
A
641 643anti-parallel
Strand 3
A
614 615anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
493 495first strand
Strand 2
A
581 583anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
500 502first strand
Strand 2
A
508 513anti-parallel
Strand 3
A
549 553anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
884 890first strand
Strand 2
A
893 899anti-parallel
Strand 3
A
687 692anti-parallel
Strand 4
A
940 943anti-parallel
Strand 5
A
967 969anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
794 798first strand
Strand 2
A
802 806anti-parallel
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