Analysis of interatomic Contacts of Structural Units in PDB entry:
9D2J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9D2J entry

There are 12 chains in PDB entry 9D2J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 HIS 326LYS 415
C
 HIS 326PHE 413
D
 ASN 327ARG 414
E
 PHE 331PHE 411
F
 ASP 329LYS 416
G
 ASN 327LYS 416
H
 ASN 327LYS 415
a
 T 1 G 47
b
 C 1 A 47
c
 T 1 T 46
d
 A 1 A 46
A
 ASP 329ASP 409
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 9D2J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
329 333Right-handed 310
Helix 2
AA2
B
341 351Right-handed alpha
Helix 3
AA3
B
359 371Right-handed alpha
Helix 4
AA4
B
372 376Right-handed 310
Helix 5
AA5
B
380 392Right-handed alpha
Helix 6
AA6
B
409 415Right-handed alpha
Helix 7
AA7
C
329 333Right-handed 310
Helix 8
AA8
C
341 351Right-handed alpha
Helix 9
AA9
C
359 371Right-handed alpha
Helix 10
AB1
C
372 376Right-handed 310
Helix 11
AB2
C
377 392Right-handed alpha
Helix 12
AB3
D
329 334Right-handed alpha
Helix 13
AB4
D
341 351Right-handed alpha
Helix 14
AB5
D
359 371Right-handed alpha
Helix 15
AB6
D
372 376Right-handed 310
Helix 16
AB7
D
377 392Right-handed alpha
Helix 17
AB8
D
409 414Right-handed alpha
Helix 18
AB9
E
341 351Right-handed alpha
Helix 19
AC1
E
359 371Right-handed alpha
Helix 20
AC2
E
380 392Right-handed alpha
Helix 21
AC3
F
341 351Right-handed alpha
Helix 22
AC4
F
359 371Right-handed alpha
Helix 23
AC5
F
372 376Right-handed 310
Helix 24
AC6
F
380 392Right-handed alpha
Helix 25
AC7
F
409 416Right-handed alpha
Helix 26
AC8
G
341 351Right-handed alpha
Helix 27
AC9
G
359 371Right-handed alpha
Helix 28
AD1
G
372 376Right-handed 310
Helix 29
AD2
G
377 392Right-handed alpha
Helix 30
AD3
G
409 414Right-handed alpha
Helix 31
AD4
H
328 334Right-handed alpha
Helix 32
AD5
H
341 351Right-handed alpha
Helix 33
AD6
H
359 371Right-handed alpha
Helix 34
AD7
H
372 376Right-handed 310
Helix 35
AD8
H
377 392Right-handed alpha
Helix 36
AD9
H
409 414Right-handed alpha
Helix 37
AE1
A
330 334Right-handed alpha
Helix 38
AE2
A
341 351Right-handed alpha
Helix 39
AE3
A
359 371Right-handed alpha
Helix 40
AE4
A
372 376Right-handed 310
Helix 41
AE5
A
377 392Right-handed alpha
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There are 8 sheets in PDB entry 9D2J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
395 400first strand
Strand 2
B
403 408anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
395 400first strand
Strand 2
C
403 408anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
396 399first strand
Strand 2
D
404 407anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
395 400first strand
Strand 2
E
403 408anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
395 400first strand
Strand 2
F
403 408anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
395 400first strand
Strand 2
G
403 408anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
397 400first strand
Strand 2
H
403 406anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
395 398first strand
Strand 2
A
405 408anti-parallel
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