Analysis of interatomic Contacts of Structural Units in PDB entry:
9D2L

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9D2L entry

There are 36 chains in PDB entry 9D2L (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
I	MET 328	GLU 410
U	ASN 318	VAL 408
V	ASP 329	VAL 408
F	ASN 318	ASP 409
E	ASP 329	VAL 408
y	HIS 326	GLU 412
Z	ASP 329	ASP 409
z	HIS 326	PHE 411
A	PHE 321	PHE 413
b	C 1	A 48
X	HIS 326	GLU 412
W	ASN 327	GLU 410
R	PHE 321	ARG 414
Y	ASP 329	ASP 409
g	T 1	T 47
d	A 1	A 49
c	T 1	T 49
K	MET 328	GLU 412
J	ASN 327	GLU 412
H	ASN 327	VAL 408
D	ASN 318	PHE 413
B	SER 319	ARG 414
e	T 1	T 49
M	ASN 327	GLU 412
N	MET 328	ASP 409
S	ASN 327	VAL 408
O	SER 319	LYS 415
Q	ASN 318	ARG 414
C	ASN 318	ARG 414
P	ASN 318	ARG 414
T	GLY 317	PHE 411
L	ASP 329	VAL 408
G	ASN 318	PHE 411
h	A 1	A 47
f	A 1	A 49
a	T 1	G 48

There are144 helices in PDB entry 9D2L. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	I	328	333	Right-handed alpha
Helix 2	AA2	I	341	351	Right-handed alpha
Helix 3	AA3	I	359	371	Right-handed alpha
Helix 4	AA4	I	371	377	Right-handed alpha
Helix 5	AA5	I	380	392	Right-handed alpha
Helix 6	AA6	U	323	326	Right-handed 310
Helix 7	AA7	U	327	334	Right-handed alpha
Helix 8	AA8	U	341	351	Right-handed alpha
Helix 9	AA9	U	359	371	Right-handed alpha
Helix 10	AB1	U	372	376	Right-handed 310
Helix 11	AB2	U	379	392	Right-handed alpha
Helix 12	AB3	V	341	351	Right-handed alpha
Helix 13	AB4	V	359	371	Right-handed alpha
Helix 14	AB5	V	372	376	Right-handed 310
Helix 15	AB6	V	379	391	Right-handed alpha
Helix 16	AB7	F	326	331	Right-handed alpha
Helix 17	AB8	F	341	351	Right-handed alpha
Helix 18	AB9	F	359	371	Right-handed alpha
Helix 19	AC1	F	379	392	Right-handed alpha
Helix 20	AC2	E	341	351	Right-handed alpha
Helix 21	AC3	E	359	371	Right-handed alpha
Helix 22	AC4	E	372	376	Right-handed 310
Helix 23	AC5	E	379	391	Right-handed alpha
Helix 24	AC6	y	327	334	Right-handed alpha
Helix 25	AC7	y	343	352	Right-handed alpha
Helix 26	AC8	y	359	371	Right-handed alpha
Helix 27	AC9	y	372	376	Right-handed 310
Helix 28	AD1	y	377	392	Right-handed alpha
Helix 29	AD2	Z	330	334	Right-handed alpha
Helix 30	AD3	Z	341	351	Right-handed alpha
Helix 31	AD4	Z	359	370	Right-handed alpha
Helix 32	AD5	Z	372	376	Right-handed 310
Helix 33	AD6	Z	377	392	Right-handed alpha
Helix 34	AD7	z	327	334	Right-handed alpha
Helix 35	AD8	z	341	346	Right-handed alpha
Helix 36	AD9	z	348	353	Right-handed alpha
Helix 37	AE1	z	358	370	Right-handed alpha
Helix 38	AE2	z	372	377	Right-handed alpha
Helix 39	AE3	z	379	392	Right-handed alpha
Helix 40	AE4	A	327	334	Right-handed alpha
Helix 41	AE5	A	341	351	Right-handed alpha
Helix 42	AE6	A	359	371	Right-handed alpha
Helix 43	AE7	A	371	376	Right-handed alpha
Helix 44	AE8	A	380	392	Right-handed alpha
Helix 45	AE9	X	327	334	Right-handed alpha
Helix 46	AF1	X	343	352	Right-handed alpha
Helix 47	AF2	X	359	371	Right-handed alpha
Helix 48	AF3	X	372	376	Right-handed 310
Helix 49	AF4	X	377	392	Right-handed alpha
Helix 50	AF5	W	328	334	Right-handed alpha
Helix 51	AF6	W	341	353	Right-handed alpha
Helix 52	AF7	W	354	357	Right-handed 310
Helix 53	AF8	W	358	370	Right-handed alpha
Helix 54	AF9	W	373	377	Right-handed 310
Helix 55	AG1	W	379	392	Right-handed alpha
Helix 56	AG2	R	327	334	Right-handed alpha
Helix 57	AG3	R	341	351	Right-handed alpha
Helix 58	AG4	R	359	371	Right-handed alpha
Helix 59	AG5	R	371	376	Right-handed alpha
Helix 60	AG6	R	380	392	Right-handed alpha
Helix 61	AG7	R	409	414	Right-handed alpha
Helix 62	AG8	Y	330	334	Right-handed alpha
Helix 63	AG9	Y	341	351	Right-handed alpha
Helix 64	AH1	Y	359	370	Right-handed alpha
Helix 65	AH2	Y	377	392	Right-handed alpha
Helix 66	AH3	K	329	334	Right-handed alpha
Helix 67	AH4	K	341	351	Right-handed alpha
Helix 68	AH5	K	359	371	Right-handed alpha
Helix 69	AH6	K	379	392	Right-handed alpha
Helix 70	AH7	J	328	334	Right-handed alpha
Helix 71	AH8	J	341	352	Right-handed alpha
Helix 72	AH9	J	359	371	Right-handed alpha
Helix 73	AI1	J	379	392	Right-handed alpha
Helix 74	AI2	J	393	395	Right-handed 310
Helix 75	AI3	H	328	334	Right-handed alpha
Helix 76	AI4	H	341	350	Right-handed alpha
Helix 77	AI5	H	359	371	Right-handed alpha
Helix 78	AI6	H	371	376	Right-handed alpha
Helix 79	AI7	H	380	391	Right-handed alpha
Helix 80	AI8	D	327	334	Right-handed alpha
Helix 81	AI9	D	341	351	Right-handed alpha
Helix 82	AJ1	D	359	371	Right-handed alpha
Helix 83	AJ2	D	371	376	Right-handed alpha
Helix 84	AJ3	D	382	392	Right-handed alpha
Helix 85	AJ4	B	326	330	Right-handed 310
Helix 86	AJ5	B	341	352	Right-handed alpha
Helix 87	AJ6	B	359	371	Right-handed alpha
Helix 88	AJ7	B	380	392	Right-handed alpha
Helix 89	AJ8	M	328	334	Right-handed alpha
Helix 90	AJ9	M	341	352	Right-handed alpha
Helix 91	AK1	M	359	371	Right-handed alpha
Helix 92	AK2	M	379	392	Right-handed alpha
Helix 93	AK3	M	393	395	Right-handed 310
Helix 94	AK4	N	329	335	Right-handed alpha
Helix 95	AK5	N	343	350	Right-handed alpha
Helix 96	AK6	N	359	371	Right-handed alpha
Helix 97	AK7	N	372	376	Right-handed 310
Helix 98	AK8	N	380	392	Right-handed alpha
Helix 99	AK9	S	328	334	Right-handed alpha
Helix 100	AL1	S	341	350	Right-handed alpha
Helix 101	AL2	S	359	371	Right-handed alpha
Helix 102	AL3	S	371	376	Right-handed alpha
Helix 103	AL4	S	380	391	Right-handed alpha
Helix 104	AL5	O	327	334	Right-handed alpha
Helix 105	AL6	O	341	351	Right-handed alpha
Helix 106	AL7	O	359	371	Right-handed alpha
Helix 107	AL8	O	371	376	Right-handed alpha
Helix 108	AL9	O	382	392	Right-handed alpha
Helix 109	AM1	O	409	414	Right-handed alpha
Helix 110	AM2	Q	327	332	Right-handed alpha
Helix 111	AM3	Q	341	352	Right-handed alpha
Helix 112	AM4	Q	359	371	Right-handed alpha
Helix 113	AM5	Q	373	377	Right-handed 310
Helix 114	AM6	Q	380	392	Right-handed alpha
Helix 115	AM7	Q	409	414	Right-handed alpha
Helix 116	AM8	C	324	326	Right-handed 310
Helix 117	AM9	C	327	334	Right-handed alpha
Helix 118	AN1	C	341	351	Right-handed alpha
Helix 119	AN2	C	359	371	Right-handed alpha
Helix 120	AN3	C	371	376	Right-handed alpha
Helix 121	AN4	C	379	392	Right-handed alpha
Helix 122	AN5	C	410	413	Right-handed 310
Helix 123	AN6	P	327	334	Right-handed alpha
Helix 124	AN7	P	341	351	Right-handed alpha
Helix 125	AN8	P	359	371	Right-handed alpha
Helix 126	AN9	P	371	376	Right-handed alpha
Helix 127	AO1	P	379	392	Right-handed alpha
Helix 128	AO2	P	409	414	Right-handed alpha
Helix 129	AO3	T	323	326	Right-handed 310
Helix 130	AO4	T	327	332	Right-handed alpha
Helix 131	AO5	T	341	351	Right-handed alpha
Helix 132	AO6	T	359	371	Right-handed alpha
Helix 133	AO7	T	371	376	Right-handed alpha
Helix 134	AO8	T	379	392	Right-handed alpha
Helix 135	AO9	L	341	351	Right-handed alpha
Helix 136	AP1	L	359	371	Right-handed alpha
Helix 137	AP2	L	372	377	Right-handed alpha
Helix 138	AP3	L	380	392	Right-handed alpha
Helix 139	AP4	G	323	326	Right-handed 310
Helix 140	AP5	G	327	332	Right-handed alpha
Helix 141	AP6	G	341	351	Right-handed alpha
Helix 142	AP7	G	359	371	Right-handed alpha
Helix 143	AP8	G	371	376	Right-handed alpha
Helix 144	AP9	G	379	392	Right-handed alpha

There are 25 sheets in PDB entry 9D2L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	395	398	first strand
Strand 2	I	405	408	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	396	399	first strand
Strand 2	U	404	407	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	396	398	first strand
Strand 2	V	405	407	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	395	399	first strand
Strand 2	F	404	408	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	396	398	first strand
Strand 2	E	405	407	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	y	399	400	first strand
Strand 2	y	403	404	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	395	399	first strand
Strand 2	Z	404	408	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	395	398	first strand
Strand 2	A	405	408	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	399	400	first strand
Strand 2	X	403	404	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	395	398	first strand
Strand 2	R	405	408	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	395	399	first strand
Strand 2	Y	404	408	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	395	399	first strand
Strand 2	K	404	408	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	397	398	first strand
Strand 2	J	405	406	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	396	398	first strand
Strand 2	H	405	407	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	395	399	first strand
Strand 2	D	404	408	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	395	400	first strand
Strand 2	B	403	408	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	397	398	first strand
Strand 2	M	405	406	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	397	399	first strand
Strand 2	N	404	406	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	396	398	first strand
Strand 2	S	405	407	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	357	358	first strand
Strand 2	O	404	408	anti-parallel
Strand 3	O	395	399	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	395	400	first strand
Strand 2	Q	403	408	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	395	398	first strand
Strand 2	C	405	408	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	395	398	first strand
Strand 2	P	405	408	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	396	398	first strand
Strand 2	L	405	407	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	395	398	first strand
Strand 2	G	405	408	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9D2L

Analysis of interatomic Contacts of Structural Units in PDB entry:
9D2L