Analysis of interatomic Contacts of Structural Units in PDB entry:
9D2M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9D2M entry

There are 3 chains in PDB entry 9D2M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 25	ILE 516
B	ALA 25	ILE 516
C	ALA 25	ILE 516

There are 27 helices in PDB entry 9D2M. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	79	86	Right-handed alpha
Helix 2	AA2	A	87	91	Right-handed 310
Helix 3	AA3	A	118	126	Right-handed alpha
Helix 4	AA4	A	201	210	Right-handed alpha
Helix 5	AA5	A	380	399	Right-handed alpha
Helix 6	AA6	A	418	469	Right-handed alpha
Helix 7	AA7	A	488	497	Right-handed alpha
Helix 8	AA8	A	501	504	Right-handed 310
Helix 9	AA9	A	505	514	Right-handed alpha
Helix 10	AB1	B	79	86	Right-handed alpha
Helix 11	AB2	B	87	91	Right-handed 310
Helix 12	AB3	B	118	126	Right-handed alpha
Helix 13	AB4	B	201	210	Right-handed alpha
Helix 14	AB5	B	380	399	Right-handed alpha
Helix 15	AB6	B	418	469	Right-handed alpha
Helix 16	AB7	B	488	497	Right-handed alpha
Helix 17	AB8	B	501	504	Right-handed 310
Helix 18	AB9	B	505	514	Right-handed alpha
Helix 19	AC1	C	79	86	Right-handed alpha
Helix 20	AC2	C	87	91	Right-handed 310
Helix 21	AC3	C	118	126	Right-handed alpha
Helix 22	AC4	C	201	210	Right-handed alpha
Helix 23	AC5	C	380	399	Right-handed alpha
Helix 24	AC6	C	418	469	Right-handed alpha
Helix 25	AC7	C	488	497	Right-handed alpha
Helix 26	AC8	C	501	504	Right-handed 310
Helix 27	AC9	C	505	514	Right-handed alpha

There are 33 sheets in PDB entry 9D2M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	374	379	first strand
Strand 2	A	365	371	anti-parallel
Strand 3	A	26	31	anti-parallel
Strand 4	A	480	483	anti-parallel
Strand 5	A	473	475	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	40	first strand
Strand 2	A	48	50	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	55	first strand
Strand 2	A	329	331	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	58	first strand
Strand 2	A	308	309	parallel
Strand 3	A	321	322	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	66	first strand
Strand 2	A	288	289	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	75	first strand
Strand 2	A	100	103	parallel
Strand 3	A	280	283	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	115	first strand
Strand 2	A	243	251	parallel
Strand 3	A	190	198	anti-parallel
Strand 4	A	270	273	anti-parallel
Strand 5	A	134	136	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	115	first strand
Strand 2	A	243	251	parallel
Strand 3	A	190	198	anti-parallel
Strand 4	A	265	268	anti-parallel
Strand 5	A	165	170	anti-parallel
Strand 6	A	144	148	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	154	155	first strand
Strand 2	A	158	159	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	178	183	first strand
Strand 2	A	256	261	anti-parallel
Strand 3	A	216	219	anti-parallel
Strand 4	A	224	227	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	300	302	first strand
Strand 2	A	295	297	anti-parallel
Strand 3	A	316	319	anti-parallel
Strand 4	A	403	405	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	374	379	first strand
Strand 2	B	365	371	anti-parallel
Strand 3	B	26	31	anti-parallel
Strand 4	B	480	483	anti-parallel
Strand 5	B	473	475	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	40	first strand
Strand 2	B	48	50	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	55	first strand
Strand 2	B	329	331	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	58	first strand
Strand 2	B	308	309	parallel
Strand 3	B	321	322	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	66	first strand
Strand 2	B	288	289	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	72	75	first strand
Strand 2	B	100	103	parallel
Strand 3	B	280	283	parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	114	115	first strand
Strand 2	B	243	251	parallel
Strand 3	B	190	198	anti-parallel
Strand 4	B	270	273	anti-parallel
Strand 5	B	134	136	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	114	115	first strand
Strand 2	B	243	251	parallel
Strand 3	B	190	198	anti-parallel
Strand 4	B	265	268	anti-parallel
Strand 5	B	165	170	anti-parallel
Strand 6	B	144	148	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	154	155	first strand
Strand 2	B	158	159	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	178	183	first strand
Strand 2	B	256	261	anti-parallel
Strand 3	B	216	219	anti-parallel
Strand 4	B	224	227	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	300	302	first strand
Strand 2	B	295	297	anti-parallel
Strand 3	B	316	319	anti-parallel
Strand 4	B	403	405	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	374	379	first strand
Strand 2	C	365	371	anti-parallel
Strand 3	C	26	31	anti-parallel
Strand 4	C	480	483	anti-parallel
Strand 5	C	473	475	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	38	40	first strand
Strand 2	C	48	50	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	55	first strand
Strand 2	C	329	331	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	57	58	first strand
Strand 2	C	308	309	parallel
Strand 3	C	321	322	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	66	first strand
Strand 2	C	288	289	parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	72	75	first strand
Strand 2	C	100	103	parallel
Strand 3	C	280	283	parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	114	115	first strand
Strand 2	C	243	251	parallel
Strand 3	C	190	198	anti-parallel
Strand 4	C	270	273	anti-parallel
Strand 5	C	134	136	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	114	115	first strand
Strand 2	C	243	251	parallel
Strand 3	C	190	198	anti-parallel
Strand 4	C	265	268	anti-parallel
Strand 5	C	165	170	anti-parallel
Strand 6	C	144	148	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	154	155	first strand
Strand 2	C	158	159	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	178	183	first strand
Strand 2	C	256	261	anti-parallel
Strand 3	C	216	219	anti-parallel
Strand 4	C	224	227	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	300	302	first strand
Strand 2	C	295	297	anti-parallel
Strand 3	C	316	319	anti-parallel
Strand 4	C	403	405	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9D2M

Analysis of interatomic Contacts of Structural Units in PDB entry:
9D2M