Analysis of interatomic Contacts of Structural Units in PDB entry:
9D2Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9D2Q entry

There are 2 chains in PDB entry 9D2Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 6PHE 61
A
 LEU 63GLY 514
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 9D2Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 23Right-handed alpha
Helix 2
AA2
A
24 28Right-handed 310
Helix 3
AA3
A
37 45Right-handed alpha
Helix 4
AA4
A
54 56Right-handed 310
Helix 5
AA5
A
61 72Right-handed alpha
Helix 6
AA6
A
74 81Right-handed alpha
Helix 7
AA7
A
88 102Right-handed alpha
Helix 8
AA8
A
114 125Right-handed alpha
Helix 9
AA9
A
134 150Right-handed alpha
Helix 10
AB1
A
159 177Right-handed alpha
Helix 11
AB2
A
190 204Right-handed alpha
Helix 12
AB3
A
218 227Right-handed alpha
Helix 13
AB4
A
239 243Right-handed 310
Helix 14
AB5
A
248 259Right-handed alpha
Helix 15
AB6
A
266 282Right-handed alpha
Helix 16
AB7
A
286 304Right-handed alpha
Helix 17
AB8
A
320 322Right-handed 310
Helix 18
AB9
A
323 334Right-handed alpha
Helix 19
AC1
A
350 360Right-handed alpha
Helix 20
AC2
A
387 402Right-handed alpha
Helix 21
AC3
A
412 418Right-handed alpha
Helix 22
AC4
A
419 422Right-handed 310
Helix 23
AC5
A
445 455Right-handed alpha
Helix 24
AC6
A
505 512Right-handed alpha
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There are 3 sheets in PDB entry 9D2Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 36first strand
Strand 2
A
47 52anti-parallel
Strand 3
A
309 314parallel
Strand 4
A
182 186parallel
Strand 5
A
208 214parallel
Strand 6
A
261 265parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 130first strand
Strand 2
A
105 109parallel
Strand 3
A
82 85parallel
Strand 4
A
152 153parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
405 408first strand
Strand 2
A
338 346anti-parallel
Strand 3
A
376 384anti-parallel
Strand 4
A
364 370anti-parallel
Strand 5
A
460 465anti-parallel
Strand 6
A
472 480anti-parallel
Strand 7
A
433 441anti-parallel
Strand 8
A
498 501anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il