Analysis of interatomic Contacts of Structural Units in PDB entry:
9D2R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9D2R entry

There is 1 chain in PDB entry 9D2R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 335GLY 514
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 7 helices in PDB entry 9D2R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
350 359Right-handed alpha
Helix 2
AA2
A
387 402Right-handed alpha
Helix 3
AA3
A
412 418Right-handed alpha
Helix 4
AA4
A
419 422Right-handed 310
Helix 5
AA5
A
445 455Right-handed alpha
Helix 6
AA6
A
488 495Right-handed alpha
Helix 7
AA7
A
505 512Right-handed alpha
Back to top of page

There is 1 sheet (AA1) in PDB entry 9D2R.

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
405 408first strand
Strand 2
A
338 346anti-parallel
Strand 3
A
376 384anti-parallel
Strand 4
A
363 370anti-parallel
Strand 5
A
460 466anti-parallel
Strand 6
A
472 480anti-parallel
Strand 7
A
433 441anti-parallel
Strand 8
A
500 501anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il