Analysis of interatomic Contacts of Structural Units in PDB entry:
9D2T

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9D2T entry

There are 8 chains in PDB entry 9D2T (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 336	ILE 422
B	MET 337	ILE 422
C	HIS 335	ILE 422
D	ARG 332	ILE 422
E	SER 334	ILE 422
F	HIS 335	ILE 422
H	MET 337	ILE 422
G	MET 337	ILE 422

There are 30 helices in PDB entry 9D2T. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	350	358	Right-handed alpha
Helix 2	AA2	A	390	392	Right-handed 310
Helix 3	AA3	A	393	405	Right-handed alpha
Helix 4	AA4	A	414	422	Right-handed alpha
Helix 5	AA5	B	350	358	Right-handed alpha
Helix 6	AA6	B	390	392	Right-handed 310
Helix 7	AA7	B	393	405	Right-handed alpha
Helix 8	AA8	B	414	422	Right-handed alpha
Helix 9	AA9	C	350	358	Right-handed alpha
Helix 10	AB1	C	390	392	Right-handed 310
Helix 11	AB2	C	393	405	Right-handed alpha
Helix 12	AB3	C	414	422	Right-handed alpha
Helix 13	AB4	D	350	358	Right-handed alpha
Helix 14	AB5	D	390	392	Right-handed 310
Helix 15	AB6	D	393	405	Right-handed alpha
Helix 16	AB7	D	414	422	Right-handed alpha
Helix 17	AB8	E	350	358	Right-handed alpha
Helix 18	AB9	E	390	392	Right-handed 310
Helix 19	AC1	E	393	405	Right-handed alpha
Helix 20	AC2	E	414	421	Right-handed alpha
Helix 21	AC3	F	350	359	Right-handed alpha
Helix 22	AC4	F	390	392	Right-handed 310
Helix 23	AC5	F	393	405	Right-handed alpha
Helix 24	AC6	F	414	422	Right-handed alpha
Helix 25	AC7	H	350	358	Right-handed alpha
Helix 26	AC8	H	392	405	Right-handed alpha
Helix 27	AC9	H	414	422	Right-handed alpha
Helix 28	AD1	G	350	358	Right-handed alpha
Helix 29	AD2	G	393	405	Right-handed alpha
Helix 30	AD3	G	414	422	Right-handed alpha

There are 8 sheets in PDB entry 9D2T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	365	371	first strand
Strand 2	A	381	387	anti-parallel
Strand 3	A	338	344	anti-parallel
Strand 4	A	409	410	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	365	370	first strand
Strand 2	B	381	387	anti-parallel
Strand 3	B	338	344	anti-parallel
Strand 4	B	409	410	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	365	371	first strand
Strand 2	C	381	387	anti-parallel
Strand 3	C	339	344	anti-parallel
Strand 4	C	409	410	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	365	370	first strand
Strand 2	D	382	387	anti-parallel
Strand 3	D	338	343	anti-parallel
Strand 4	D	409	410	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	365	373	first strand
Strand 2	E	381	387	anti-parallel
Strand 3	E	338	344	anti-parallel
Strand 4	E	409	410	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	365	370	first strand
Strand 2	F	382	387	anti-parallel
Strand 3	F	338	343	anti-parallel
Strand 4	F	409	410	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	365	373	first strand
Strand 2	H	381	387	anti-parallel
Strand 3	H	338	344	anti-parallel
Strand 4	H	409	410	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	365	372	first strand
Strand 2	G	381	387	anti-parallel
Strand 3	G	338	344	anti-parallel
Strand 4	G	409	410	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9D2T

Analysis of interatomic Contacts of Structural Units in PDB entry:
9D2T