Analysis of interatomic Contacts of Structural Units in PDB entry:
9D30

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9D30 entry

There are 2 chains in PDB entry 9D30 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 892	ALA 2106
B	THR 892	GLU 2000

There are 89 helices in PDB entry 9D30. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	923	927	Right-handed 310
Helix 2	AA2	A	938	955	Right-handed alpha
Helix 3	AA3	A	996	1000	Right-handed 310
Helix 4	AA4	A	1022	1030	Right-handed alpha
Helix 5	AA5	A	1035	1046	Right-handed alpha
Helix 6	AA6	A	1077	1086	Right-handed 310
Helix 7	AA7	A	1090	1106	Right-handed alpha
Helix 8	AA8	A	1177	1188	Right-handed alpha
Helix 9	AA9	A	1223	1238	Right-handed alpha
Helix 10	AB1	A	1254	1258	Right-handed 310
Helix 11	AB2	A	1259	1267	Right-handed alpha
Helix 12	AB3	A	1289	1310	Right-handed alpha
Helix 13	AB4	A	1338	1343	Right-handed alpha
Helix 14	AB5	A	1343	1355	Right-handed alpha
Helix 15	AB6	A	1367	1369	Right-handed 310
Helix 16	AB7	A	1370	1381	Right-handed alpha
Helix 17	AB8	A	1430	1432	Right-handed 310
Helix 18	AB9	A	1459	1467	Right-handed alpha
Helix 19	AC1	A	1522	1524	Right-handed 310
Helix 20	AC2	A	1532	1540	Right-handed alpha
Helix 21	AC3	A	1542	1552	Right-handed alpha
Helix 22	AC4	A	1569	1583	Right-handed alpha
Helix 23	AC5	A	1592	1602	Right-handed alpha
Helix 24	AC6	A	1614	1622	Right-handed alpha
Helix 25	AC7	A	1637	1647	Right-handed alpha
Helix 26	AC8	A	1660	1664	Right-handed 310
Helix 27	AC9	A	1669	1674	Right-handed 310
Helix 28	AD1	A	1682	1690	Right-handed alpha
Helix 29	AD2	A	1690	1707	Right-handed alpha
Helix 30	AD3	A	1722	1733	Right-handed alpha
Helix 31	AD4	A	1775	1788	Right-handed alpha
Helix 32	AD5	A	1801	1814	Right-handed alpha
Helix 33	AD6	A	1827	1841	Right-handed alpha
Helix 34	AD7	A	1864	1887	Right-handed alpha
Helix 35	AD8	A	1900	1904	Right-handed alpha
Helix 36	AD9	A	1910	1929	Right-handed alpha
Helix 37	AE1	A	1944	1946	Right-handed 310
Helix 38	AE2	A	1947	1952	Right-handed alpha
Helix 39	AE3	A	1959	1971	Right-handed alpha
Helix 40	AE4	A	1988	1996	Right-handed alpha
Helix 41	AE5	A	2010	2013	Right-handed 310
Helix 42	AE6	A	2014	2019	Right-handed alpha
Helix 43	AE7	A	2020	2022	Right-handed 310
Helix 44	AE8	A	2023	2044	Right-handed alpha
Helix 45	AE9	A	2052	2057	Right-handed alpha
Helix 46	AF1	A	2061	2075	Right-handed alpha
Helix 47	AF2	A	2081	2086	Right-handed alpha
Helix 48	AF3	A	2088	2106	Right-handed alpha
Helix 49	AF4	B	923	927	Right-handed 310
Helix 50	AF5	B	930	934	Right-handed 310
Helix 51	AF6	B	938	954	Right-handed alpha
Helix 52	AF7	B	996	1000	Right-handed 310
Helix 53	AF8	B	1030	1034	Right-handed 310
Helix 54	AF9	B	1035	1036	Right-handed 310
Helix 55	AG1	B	1037	1042	Right-handed alpha
Helix 56	AG2	B	1042	1047	Right-handed alpha
Helix 57	AG3	B	1077	1082	Right-handed alpha
Helix 58	AG4	B	1090	1106	Right-handed alpha
Helix 59	AG5	B	1180	1190	Right-handed alpha
Helix 60	AG6	B	1222	1238	Right-handed alpha
Helix 61	AG7	B	1254	1259	Right-handed alpha
Helix 62	AG8	B	1287	1311	Right-handed alpha
Helix 63	AG9	B	1339	1342	Right-handed 310
Helix 64	AH1	B	1343	1355	Right-handed alpha
Helix 65	AH2	B	1370	1380	Right-handed alpha
Helix 66	AH3	B	1405	1409	Right-handed 310
Helix 67	AH4	B	1459	1467	Right-handed alpha
Helix 68	AH5	B	1520	1522	Right-handed 310
Helix 69	AH6	B	1532	1540	Right-handed alpha
Helix 70	AH7	B	1542	1551	Right-handed alpha
Helix 71	AH8	B	1569	1582	Right-handed alpha
Helix 72	AH9	B	1592	1603	Right-handed alpha
Helix 73	AI1	B	1614	1623	Right-handed alpha
Helix 74	AI2	B	1636	1647	Right-handed alpha
Helix 75	AI3	B	1657	1663	Right-handed alpha
Helix 76	AI4	B	1670	1675	Right-handed 310
Helix 77	AI5	B	1682	1690	Right-handed alpha
Helix 78	AI6	B	1690	1707	Right-handed alpha
Helix 79	AI7	B	1722	1732	Right-handed alpha
Helix 80	AI8	B	1774	1787	Right-handed alpha
Helix 81	AI9	B	1801	1814	Right-handed alpha
Helix 82	AJ1	B	1827	1841	Right-handed alpha
Helix 83	AJ2	B	1859	1864	Right-handed 310
Helix 84	AJ3	B	1865	1876	Right-handed alpha
Helix 85	AJ4	B	1876	1885	Right-handed alpha
Helix 86	AJ5	B	1900	1905	Right-handed alpha
Helix 87	AJ6	B	1910	1930	Right-handed alpha
Helix 88	AJ7	B	1961	1972	Right-handed alpha
Helix 89	AJ8	B	1986	1996	Right-handed alpha

There are 19 sheets in PDB entry 9D30. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	901	904	first strand
Strand 2	A	910	917	anti-parallel
Strand 3	A	980	985	anti-parallel
Strand 4	A	988	994	anti-parallel
Strand 5	A	1003	1008	anti-parallel
Strand 6	A	961	965	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	901	904	first strand
Strand 2	A	910	917	anti-parallel
Strand 3	A	976	977	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1117	1125	first strand
Strand 2	A	1163	1172	anti-parallel
Strand 3	A	1155	1157	anti-parallel
Strand 4	A	1134	1136	anti-parallel

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There are 14 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1212	1215	first strand
Strand 2	A	1275	1278	parallel
Strand 3	A	1318	1323	parallel
Strand 4	A	1362	1365	parallel
Strand 5	A	1386	1389	parallel
Strand 6	A	1394	1401	anti-parallel
Strand 7	A	1190	1198	anti-parallel
Strand 8	A	1977	1980	anti-parallel
Strand 9	A	1934	1938	parallel
Strand 10	A	1895	1899	parallel
Strand 11	A	1845	1850	parallel
Strand 12	A	1766	1770	parallel
Strand 13	A	1792	1796	parallel
Strand 14	A	1819	1822	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1411	1414	first strand
Strand 2	A	1750	1753	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1421	1425	first strand
Strand 2	A	1434	1438	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1503	1507	first strand
Strand 2	A	1483	1491	anti-parallel
Strand 3	A	1448	1457	anti-parallel
Strand 4	A	1516	1520	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1503	1507	first strand
Strand 2	A	1483	1491	anti-parallel
Strand 3	A	1448	1457	anti-parallel
Strand 4	A	1740	1742	anti-parallel
Strand 5	A	1718	1719	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1562	1564	first strand
Strand 2	A	1630	1632	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1588	1590	first strand
Strand 2	A	1607	1609	parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1653	1655	first strand
Strand 2	A	1677	1680	parallel
Strand 3	B	1677	1680	anti-parallel
Strand 4	B	1652	1655	parallel
Strand 5	B	1630	1633	parallel
Strand 6	B	1561	1564	parallel
Strand 7	B	1585	1590	parallel
Strand 8	B	1607	1609	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	903	905	first strand
Strand 2	B	911	913	anti-parallel
Strand 3	B	975	985	anti-parallel
Strand 4	B	916	918	anti-parallel

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There are 10 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	903	905	first strand
Strand 2	B	911	913	anti-parallel
Strand 3	B	975	985	anti-parallel
Strand 4	B	988	994	anti-parallel
Strand 5	B	1003	1011	anti-parallel
Strand 6	B	958	964	anti-parallel
Strand 7	B	1119	1125	anti-parallel
Strand 8	B	1163	1171	anti-parallel
Strand 9	B	1152	1158	anti-parallel
Strand 10	B	1132	1136	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1191	1197	first strand
Strand 2	B	1394	1401	anti-parallel
Strand 3	B	1386	1389	anti-parallel
Strand 4	B	1361	1365	parallel
Strand 5	B	1317	1323	parallel
Strand 6	B	1274	1278	parallel
Strand 7	B	1211	1214	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1411	1414	first strand
Strand 2	B	1750	1753	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1421	1425	first strand
Strand 2	B	1434	1438	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1524	1526	first strand
Strand 2	B	1503	1507	anti-parallel
Strand 3	B	1483	1491	anti-parallel
Strand 4	B	1449	1457	anti-parallel
Strand 5	B	1738	1742	anti-parallel
Strand 6	B	1715	1719	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1792	1795	first strand
Strand 2	B	1766	1770	parallel
Strand 3	B	1845	1850	parallel
Strand 4	B	1893	1894	parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1897	1898	first strand
Strand 2	B	1935	1937	parallel
Strand 3	B	1977	1979	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9D30

Analysis of interatomic Contacts of Structural Units in PDB entry:
9D30