Analysis of interatomic Contacts of Structural Units in PDB entry:
9D32


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9D32 entry

There are 2 chains in PDB entry 9D32 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 20GLY 603
B
 GLN 390PRO 585
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 41 helices in PDB entry 9D32. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 52Right-handed alpha
Helix 2
AA2
A
55 81Right-handed alpha
Helix 3
AA3
A
82 83Right-handed 310
Helix 4
AA4
A
84 88Right-handed 310
Helix 5
AA5
A
92 101Right-handed alpha
Helix 6
AA6
A
103 108Right-handed 310
Helix 7
AA7
A
110 129Right-handed alpha
Helix 8
AA8
A
144 152Right-handed alpha
Helix 9
AA9
A
156 171Right-handed alpha
Helix 10
AB1
A
175 193Right-handed alpha
Helix 11
AB2
A
197 204Right-handed alpha
Helix 12
AB3
A
205 207Right-handed 310
Helix 13
AB4
A
220 251Right-handed alpha
Helix 14
AB5
A
264 266Right-handed 310
Helix 15
AB6
A
274 276Right-handed 310
Helix 16
AB7
A
277 282Right-handed alpha
Helix 17
AB8
A
292 299Right-handed alpha
Helix 18
AB9
A
302 317Right-handed alpha
Helix 19
AC1
A
323 330Right-handed alpha
Helix 20
AC2
A
364 384Right-handed alpha
Helix 21
AC3
A
388 392Right-handed 310
Helix 22
AC4
A
398 412Right-handed alpha
Helix 23
AC5
A
413 421Right-handed alpha
Helix 24
AC6
A
430 446Right-handed alpha
Helix 25
AC7
A
448 465Right-handed alpha
Helix 26
AC8
A
468 470Right-handed 310
Helix 27
AC9
A
471 483Right-handed alpha
Helix 28
AD1
A
498 501Right-handed 310
Helix 29
AD2
A
502 507Right-handed alpha
Helix 30
AD3
A
512 532Right-handed alpha
Helix 31
AD4
A
537 541Right-handed 310
Helix 32
AD5
A
546 558Right-handed alpha
Helix 33
AD6
A
564 574Right-handed alpha
Helix 34
AD7
A
580 587Right-handed alpha
Helix 35
AD8
A
587 599Right-handed alpha
Helix 36
AD9
B
404 408Right-handed 310
Helix 37
AE1
B
423 427Right-handed 310
Helix 38
AE2
B
438 443Right-handed alpha
Helix 39
AE3
B
458 465Right-handed 310
Helix 40
AE4
B
471 477Right-handed alpha
Helix 41
AE5
B
533 538Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 9D32. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 133first strand
Strand 2
A
141 143anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 262first strand
Strand 2
A
486 487parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
346 349first strand
Strand 2
A
355 358anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
409 413first strand
Strand 2
B
449 456anti-parallel
Strand 3
B
567 575anti-parallel
Strand 4
B
486 492anti-parallel
Strand 5
B
428 435anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
519 522first strand
Strand 2
B
505 516anti-parallel
Strand 3
B
553 561anti-parallel
Strand 4
B
546 549anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il