Analysis of interatomic Contacts of Structural Units in PDB entry:
9D37

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9D37 entry

There are 4 chains in PDB entry 9D37 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 25	TYR 837
B	SER 34	LEU 841
C	LYS 25	ARG 839
D	ASN 52	ARG 872

There are120 helices in PDB entry 9D37. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	53	Right-handed alpha
Helix 2	AA2	A	71	82	Right-handed alpha
Helix 3	AA3	A	83	86	Right-handed 310
Helix 4	AA4	A	106	111	Right-handed alpha
Helix 5	AA5	A	126	130	Right-handed 310
Helix 6	AA6	A	143	146	Right-handed 310
Helix 7	AA7	A	147	158	Right-handed alpha
Helix 8	AA8	A	170	186	Right-handed alpha
Helix 9	AA9	A	205	213	Right-handed alpha
Helix 10	AB1	A	227	238	Right-handed alpha
Helix 11	AB2	A	250	255	Right-handed alpha
Helix 12	AB3	A	256	262	Right-handed 310
Helix 13	AB4	A	276	297	Right-handed alpha
Helix 14	AB5	A	317	326	Right-handed alpha
Helix 15	AB6	A	381	385	Right-handed 310
Helix 16	AB7	A	457	471	Right-handed alpha
Helix 17	AB8	A	500	506	Right-handed alpha
Helix 18	AB9	A	522	526	Right-handed 310
Helix 19	AC1	A	559	583	Right-handed alpha
Helix 20	AC2	A	603	616	Right-handed alpha
Helix 21	AC3	A	626	655	Right-handed alpha
Helix 22	AC4	A	669	674	Right-handed alpha
Helix 23	AC5	A	688	696	Right-handed alpha
Helix 24	AC6	A	699	707	Right-handed alpha
Helix 25	AC7	A	713	723	Right-handed alpha
Helix 26	AC8	A	733	744	Right-handed alpha
Helix 27	AC9	A	768	782	Right-handed alpha
Helix 28	AD1	A	783	793	Right-handed alpha
Helix 29	AD2	A	814	837	Right-handed alpha
Helix 30	AD3	B	46	53	Right-handed alpha
Helix 31	AD4	B	77	92	Right-handed alpha
Helix 32	AD5	B	107	119	Right-handed alpha
Helix 33	AD6	B	127	132	Right-handed 310
Helix 34	AD7	B	149	165	Right-handed alpha
Helix 35	AD8	B	178	192	Right-handed alpha
Helix 36	AD9	B	212	221	Right-handed alpha
Helix 37	AE1	B	233	248	Right-handed alpha
Helix 38	AE2	B	259	264	Right-handed alpha
Helix 39	AE3	B	288	311	Right-handed alpha
Helix 40	AE4	B	332	339	Right-handed alpha
Helix 41	AE5	B	459	472	Right-handed alpha
Helix 42	AE6	B	496	502	Right-handed alpha
Helix 43	AE7	B	516	521	Right-handed alpha
Helix 44	AE8	B	559	576	Right-handed alpha
Helix 45	AE9	B	601	614	Right-handed alpha
Helix 46	AF1	B	625	654	Right-handed alpha
Helix 47	AF2	B	668	673	Right-handed alpha
Helix 48	AF3	B	689	699	Right-handed alpha
Helix 49	AF4	B	699	706	Right-handed alpha
Helix 50	AF5	B	713	724	Right-handed alpha
Helix 51	AF6	B	732	742	Right-handed alpha
Helix 52	AF7	B	743	747	Right-handed 310
Helix 53	AF8	B	772	787	Right-handed alpha
Helix 54	AF9	B	787	797	Right-handed alpha
Helix 55	AG1	B	819	840	Right-handed alpha
Helix 56	AG2	C	35	38	Right-handed 310
Helix 57	AG3	C	39	48	Right-handed alpha
Helix 58	AG4	C	71	78	Right-handed 310
Helix 59	AG5	C	82	86	Right-handed 310
Helix 60	AG6	C	103	114	Right-handed alpha
Helix 61	AG7	C	125	129	Right-handed 310
Helix 62	AG8	C	143	145	Right-handed 310
Helix 63	AG9	C	146	157	Right-handed alpha
Helix 64	AH1	C	170	189	Right-handed alpha
Helix 65	AH2	C	205	210	Right-handed alpha
Helix 66	AH3	C	211	214	Right-handed 310
Helix 67	AH4	C	226	237	Right-handed alpha
Helix 68	AH5	C	251	254	Right-handed 310
Helix 69	AH6	C	255	259	Right-handed 310
Helix 70	AH7	C	276	296	Right-handed alpha
Helix 71	AH8	C	317	327	Right-handed alpha
Helix 72	AH9	C	415	419	Right-handed 310
Helix 73	AI1	C	457	471	Right-handed alpha
Helix 74	AI2	C	500	506	Right-handed alpha
Helix 75	AI3	C	520	525	Right-handed alpha
Helix 76	AI4	C	559	584	Right-handed alpha
Helix 77	AI5	C	602	616	Right-handed alpha
Helix 78	AI6	C	626	652	Right-handed alpha
Helix 79	AI7	C	669	674	Right-handed alpha
Helix 80	AI8	C	687	693	Right-handed alpha
Helix 81	AI9	C	702	707	Right-handed alpha
Helix 82	AJ1	C	713	723	Right-handed alpha
Helix 83	AJ2	C	733	743	Right-handed alpha
Helix 84	AJ3	C	766	769	Right-handed 310
Helix 85	AJ4	C	770	782	Right-handed alpha
Helix 86	AJ5	C	784	793	Right-handed alpha
Helix 87	AJ6	C	814	822	Right-handed alpha
Helix 88	AJ7	C	825	839	Right-handed alpha
Helix 89	AJ8	D	59	61	Right-handed 310
Helix 90	AJ9	D	62	67	Right-handed alpha
Helix 91	AK1	D	68	75	Right-handed alpha
Helix 92	AK2	D	97	111	Right-handed alpha
Helix 93	AK3	D	123	125	Right-handed 310
Helix 94	AK4	D	126	137	Right-handed alpha
Helix 95	AK5	D	146	150	Right-handed 310
Helix 96	AK6	D	167	182	Right-handed alpha
Helix 97	AK7	D	196	203	Right-handed alpha
Helix 98	AK8	D	203	208	Right-handed alpha
Helix 99	AK9	D	228	236	Right-handed alpha
Helix 100	AL1	D	249	264	Right-handed alpha
Helix 101	AL2	D	316	338	Right-handed alpha
Helix 102	AL3	D	343	347	Right-handed 310
Helix 103	AL4	D	486	500	Right-handed alpha
Helix 104	AL5	D	523	530	Right-handed alpha
Helix 105	AL6	D	545	549	Right-handed 310
Helix 106	AL7	D	573	578	Right-handed 310
Helix 107	AL8	D	582	588	Right-handed alpha
Helix 108	AL9	D	588	603	Right-handed alpha
Helix 109	AM1	D	604	606	Right-handed 310
Helix 110	AM2	D	629	641	Right-handed alpha
Helix 111	AM3	D	654	683	Right-handed alpha
Helix 112	AM4	D	695	700	Right-handed alpha
Helix 113	AM5	D	701	704	Right-handed 310
Helix 114	AM6	D	716	724	Right-handed alpha
Helix 115	AM7	D	726	733	Right-handed alpha
Helix 116	AM8	D	740	751	Right-handed alpha
Helix 117	AM9	D	760	769	Right-handed alpha
Helix 118	AN1	D	799	813	Right-handed alpha
Helix 119	AN2	D	814	824	Right-handed alpha
Helix 120	AN3	D	840	872	Right-handed alpha

There are 27 sheets in PDB entry 9D37. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	92	first strand
Strand 2	A	118	120	parallel
Strand 3	A	137	139	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	193	197	first strand
Strand 2	A	163	168	parallel
Strand 3	A	218	222	parallel
Strand 4	A	246	247	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	271	first strand
Strand 2	A	350	357	anti-parallel
Strand 3	A	360	368	anti-parallel
Strand 4	A	371	374	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	473	478	first strand
Strand 2	A	397	402	parallel
Strand 3	A	512	513	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	410	413	first strand
Strand 2	A	450	456	anti-parallel
Strand 3	A	434	439	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	486	489	first strand
Strand 2	A	496	499	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	681	682	first strand
Strand 2	A	728	732	parallel
Strand 3	A	538	541	anti-parallel
Strand 4	A	748	749	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	72	first strand
Strand 2	B	36	41	parallel
Strand 3	B	94	99	parallel
Strand 4	B	123	125	parallel
Strand 5	B	143	145	parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	198	199	first strand
Strand 2	B	168	173	parallel
Strand 3	B	227	231	parallel
Strand 4	B	255	258	parallel
Strand 5	B	278	282	parallel
Strand 6	B	362	366	anti-parallel
Strand 7	B	374	375	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	405	410	first strand
Strand 2	B	475	480	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	418	420	first strand
Strand 2	B	455	458	anti-parallel
Strand 3	B	434	436	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	488	490	first strand
Strand 2	B	493	495	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	524	525	first strand
Strand 2	B	765	766	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	683	684	first strand
Strand 2	B	728	731	parallel
Strand 3	B	535	538	anti-parallel
Strand 4	B	749	750	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	31	33	first strand
Strand 2	C	64	66	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	193	197	first strand
Strand 2	C	164	168	parallel
Strand 3	C	220	222	parallel
Strand 4	C	248	249	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	356	first strand
Strand 2	C	361	363	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	366	367	first strand
Strand 2	C	371	372	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	476	478	first strand
Strand 2	C	400	402	parallel
Strand 3	C	512	513	parallel
Strand 4	C	761	763	anti-parallel
Strand 5	C	527	528	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	410	413	first strand
Strand 2	C	450	456	anti-parallel
Strand 3	C	434	439	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	488	489	first strand
Strand 2	C	496	497	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	681	682	first strand
Strand 2	C	728	732	parallel
Strand 3	C	538	543	anti-parallel
Strand 4	C	746	749	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	54	57	first strand
Strand 2	D	115	118	parallel
Strand 3	D	141	145	parallel
Strand 4	D	162	163	parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	188	191	first strand
Strand 2	D	243	247	parallel
Strand 3	D	271	274	parallel
Strand 4	D	304	307	parallel
Strand 5	D	389	392	anti-parallel
Strand 6	D	398	400	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	444	447	first strand
Strand 2	D	482	485	anti-parallel
Strand 3	D	460	464	anti-parallel
Strand 4	D	505	507	parallel
Strand 5	D	434	436	parallel
Strand 6	D	535	536	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	515	516	first strand
Strand 2	D	521	522	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	710	711	first strand
Strand 2	D	755	759	parallel
Strand 3	D	561	566	anti-parallel
Strand 4	D	775	777	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9D37

Analysis of interatomic Contacts of Structural Units in PDB entry:
9D37