Analysis of interatomic Contacts of Structural Units in PDB entry:
9D38

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9D38 entry

There are 4 chains in PDB entry 9D38 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 25	TYR 837
B	SER 34	GLN 845
C	LYS 25	ARG 839
D	ASN 52	ARG 872

There are117 helices in PDB entry 9D38. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	53	Right-handed alpha
Helix 2	AA2	A	82	86	Right-handed 310
Helix 3	AA3	A	103	115	Right-handed alpha
Helix 4	AA4	A	126	130	Right-handed 310
Helix 5	AA5	A	143	145	Right-handed 310
Helix 6	AA6	A	146	157	Right-handed alpha
Helix 7	AA7	A	170	182	Right-handed alpha
Helix 8	AA8	A	183	188	Right-handed 310
Helix 9	AA9	A	204	210	Right-handed alpha
Helix 10	AB1	A	211	214	Right-handed 310
Helix 11	AB2	A	224	235	Right-handed alpha
Helix 12	AB3	A	250	255	Right-handed alpha
Helix 13	AB4	A	276	296	Right-handed alpha
Helix 14	AB5	A	321	325	Right-handed 310
Helix 15	AB6	A	457	468	Right-handed alpha
Helix 16	AB7	A	499	507	Right-handed alpha
Helix 17	AB8	A	520	524	Right-handed 310
Helix 18	AB9	A	559	582	Right-handed alpha
Helix 19	AC1	A	602	615	Right-handed alpha
Helix 20	AC2	A	626	655	Right-handed alpha
Helix 21	AC3	A	669	674	Right-handed alpha
Helix 22	AC4	A	688	696	Right-handed alpha
Helix 23	AC5	A	702	707	Right-handed alpha
Helix 24	AC6	A	714	723	Right-handed alpha
Helix 25	AC7	A	733	744	Right-handed alpha
Helix 26	AC8	A	768	782	Right-handed alpha
Helix 27	AC9	A	783	793	Right-handed alpha
Helix 28	AD1	A	814	837	Right-handed alpha
Helix 29	AD2	B	47	55	Right-handed alpha
Helix 30	AD3	B	77	90	Right-handed alpha
Helix 31	AD4	B	107	119	Right-handed alpha
Helix 32	AD5	B	149	165	Right-handed alpha
Helix 33	AD6	B	180	192	Right-handed alpha
Helix 34	AD7	B	212	220	Right-handed alpha
Helix 35	AD8	B	233	248	Right-handed alpha
Helix 36	AD9	B	259	264	Right-handed alpha
Helix 37	AE1	B	288	304	Right-handed alpha
Helix 38	AE2	B	304	311	Right-handed alpha
Helix 39	AE3	B	324	330	Right-handed 310
Helix 40	AE4	B	332	338	Right-handed alpha
Helix 41	AE5	B	460	472	Right-handed alpha
Helix 42	AE6	B	495	503	Right-handed alpha
Helix 43	AE7	B	516	523	Right-handed alpha
Helix 44	AE8	B	555	579	Right-handed alpha
Helix 45	AE9	B	601	614	Right-handed alpha
Helix 46	AF1	B	629	647	Right-handed alpha
Helix 47	AF2	B	649	655	Right-handed alpha
Helix 48	AF3	B	668	673	Right-handed alpha
Helix 49	AF4	B	674	677	Right-handed 310
Helix 50	AF5	B	690	699	Right-handed alpha
Helix 51	AF6	B	699	707	Right-handed alpha
Helix 52	AF7	B	713	722	Right-handed alpha
Helix 53	AF8	B	733	741	Right-handed alpha
Helix 54	AF9	B	742	747	Right-handed 310
Helix 55	AG1	B	772	785	Right-handed alpha
Helix 56	AG2	B	788	793	Right-handed alpha
Helix 57	AG3	B	794	796	Right-handed 310
Helix 58	AG4	B	818	845	Right-handed alpha
Helix 59	AG5	C	35	48	Right-handed alpha
Helix 60	AG6	C	70	76	Right-handed alpha
Helix 61	AG7	C	104	114	Right-handed alpha
Helix 62	AG8	C	143	145	Right-handed 310
Helix 63	AG9	C	146	158	Right-handed alpha
Helix 64	AH1	C	170	185	Right-handed alpha
Helix 65	AH2	C	207	212	Right-handed alpha
Helix 66	AH3	C	224	235	Right-handed alpha
Helix 67	AH4	C	256	260	Right-handed 310
Helix 68	AH5	C	277	296	Right-handed alpha
Helix 69	AH6	C	316	327	Right-handed alpha
Helix 70	AH7	C	381	385	Right-handed 310
Helix 71	AH8	C	458	469	Right-handed alpha
Helix 72	AH9	C	499	508	Right-handed alpha
Helix 73	AI1	C	520	525	Right-handed alpha
Helix 74	AI2	C	560	583	Right-handed alpha
Helix 75	AI3	C	603	615	Right-handed alpha
Helix 76	AI4	C	629	657	Right-handed alpha
Helix 77	AI5	C	669	674	Right-handed alpha
Helix 78	AI6	C	687	694	Right-handed alpha
Helix 79	AI7	C	705	708	Right-handed 310
Helix 80	AI8	C	713	723	Right-handed alpha
Helix 81	AI9	C	733	743	Right-handed alpha
Helix 82	AJ1	C	770	782	Right-handed alpha
Helix 83	AJ2	C	783	793	Right-handed alpha
Helix 84	AJ3	C	812	816	Right-handed 310
Helix 85	AJ4	C	818	826	Right-handed alpha
Helix 86	AJ5	C	827	836	Right-handed alpha
Helix 87	AJ6	C	837	839	Right-handed 310
Helix 88	AJ7	D	60	75	Right-handed alpha
Helix 89	AJ8	D	100	109	Right-handed alpha
Helix 90	AJ9	D	123	125	Right-handed 310
Helix 91	AK1	D	126	135	Right-handed alpha
Helix 92	AK2	D	167	182	Right-handed alpha
Helix 93	AK3	D	196	210	Right-handed alpha
Helix 94	AK4	D	224	227	Right-handed 310
Helix 95	AK5	D	228	235	Right-handed alpha
Helix 96	AK6	D	236	238	Right-handed 310
Helix 97	AK7	D	249	263	Right-handed alpha
Helix 98	AK8	D	316	338	Right-handed alpha
Helix 99	AK9	D	343	347	Right-handed 310
Helix 100	AL1	D	487	500	Right-handed alpha
Helix 101	AL2	D	522	530	Right-handed alpha
Helix 102	AL3	D	545	550	Right-handed alpha
Helix 103	AL4	D	575	579	Right-handed 310
Helix 104	AL5	D	581	607	Right-handed alpha
Helix 105	AL6	D	629	633	Right-handed alpha
Helix 106	AL7	D	633	639	Right-handed alpha
Helix 107	AL8	D	652	674	Right-handed alpha
Helix 108	AL9	D	675	679	Right-handed 310
Helix 109	AM1	D	695	700	Right-handed alpha
Helix 110	AM2	D	717	726	Right-handed alpha
Helix 111	AM3	D	731	736	Right-handed 310
Helix 112	AM4	D	741	750	Right-handed alpha
Helix 113	AM5	D	761	770	Right-handed alpha
Helix 114	AM6	D	779	781	Right-handed 310
Helix 115	AM7	D	799	813	Right-handed alpha
Helix 116	AM8	D	814	824	Right-handed alpha
Helix 117	AM9	D	846	872	Right-handed alpha

There are 33 sheets in PDB entry 9D38. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	28	first strand
Strand 2	A	59	61	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	66	first strand
Strand 2	A	31	33	parallel
Strand 3	A	91	92	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	119	120	first strand
Strand 2	A	138	139	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	164	168	first strand
Strand 2	A	193	197	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	218	221	first strand
Strand 2	A	246	249	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	269	271	first strand
Strand 2	A	351	357	anti-parallel
Strand 3	A	360	367	anti-parallel
Strand 4	A	372	374	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	476	478	first strand
Strand 2	A	400	402	parallel
Strand 3	A	512	513	parallel
Strand 4	A	761	762	anti-parallel
Strand 5	A	528	529	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	410	413	first strand
Strand 2	A	450	456	anti-parallel
Strand 3	A	434	439	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	424	425	first strand
Strand 2	A	428	430	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	729	732	first strand
Strand 2	A	538	543	anti-parallel
Strand 3	A	746	749	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	71	first strand
Strand 2	B	35	42	parallel
Strand 3	B	97	101	parallel
Strand 4	B	123	127	parallel
Strand 5	B	143	145	parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	198	203	first strand
Strand 2	B	168	173	parallel
Strand 3	B	227	231	parallel
Strand 4	B	255	258	parallel
Strand 5	B	278	282	parallel
Strand 6	B	362	367	anti-parallel
Strand 7	B	373	375	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	343	344	first strand
Strand 2	B	347	348	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	377	379	first strand
Strand 2	B	384	386	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	405	410	first strand
Strand 2	B	475	480	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	417	421	first strand
Strand 2	B	453	459	anti-parallel
Strand 3	B	435	438	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	489	490	first strand
Strand 2	B	493	494	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	508	509	first strand
Strand 2	B	765	766	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	730	732	first strand
Strand 2	B	534	538	anti-parallel
Strand 3	B	749	750	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	65	first strand
Strand 2	C	28	32	parallel
Strand 3	C	87	93	parallel
Strand 4	C	118	121	parallel
Strand 5	C	138	139	parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	196	197	first strand
Strand 2	C	165	168	parallel
Strand 3	C	220	221	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	357	first strand
Strand 2	C	360	363	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	366	367	first strand
Strand 2	C	371	372	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	473	478	first strand
Strand 2	C	397	402	parallel
Strand 3	C	512	513	parallel
Strand 4	C	761	762	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	409	413	first strand
Strand 2	C	453	457	anti-parallel
Strand 3	C	434	436	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	439	440	first strand
Strand 2	C	449	450	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	710	711	first strand
Strand 2	C	681	684	parallel
Strand 3	C	728	732	parallel
Strand 4	C	538	543	anti-parallel
Strand 5	C	746	749	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	54	56	first strand
Strand 2	D	115	118	parallel
Strand 3	D	141	145	parallel
Strand 4	D	161	163	parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	188	189	first strand
Strand 2	D	243	246	parallel
Strand 3	D	271	274	parallel
Strand 4	D	304	307	parallel
Strand 5	D	386	393	anti-parallel
Strand 6	D	397	405	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	368	369	first strand
Strand 2	D	372	373	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	431	434	first strand
Strand 2	D	502	506	parallel
Strand 3	D	460	463	parallel
Strand 4	D	481	486	anti-parallel
Strand 5	D	443	446	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	756	759	first strand
Strand 2	D	558	566	anti-parallel
Strand 3	D	775	777	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	756	759	first strand
Strand 2	D	558	566	anti-parallel
Strand 3	D	784	788	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9D38

Analysis of interatomic Contacts of Structural Units in PDB entry:
9D38