Analysis of interatomic Contacts of Structural Units in PDB entry:
9D39

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9D39 entry

There are 4 chains in PDB entry 9D39 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 25	TYR 837
B	ILE 35	LEU 841
C	LYS 25	ARG 839
D	ASN 52	ARG 872

There are109 helices in PDB entry 9D39. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	51	Right-handed alpha
Helix 2	AA2	A	72	77	Right-handed alpha
Helix 3	AA3	A	82	85	Right-handed 310
Helix 4	AA4	A	103	111	Right-handed alpha
Helix 5	AA5	A	143	145	Right-handed 310
Helix 6	AA6	A	146	157	Right-handed alpha
Helix 7	AA7	A	170	186	Right-handed alpha
Helix 8	AA8	A	203	206	Right-handed 310
Helix 9	AA9	A	207	214	Right-handed alpha
Helix 10	AB1	A	227	238	Right-handed alpha
Helix 11	AB2	A	250	255	Right-handed alpha
Helix 12	AB3	A	276	296	Right-handed alpha
Helix 13	AB4	A	319	324	Right-handed alpha
Helix 14	AB5	A	325	328	Right-handed 310
Helix 15	AB6	A	457	469	Right-handed alpha
Helix 16	AB7	A	501	507	Right-handed alpha
Helix 17	AB8	A	522	526	Right-handed 310
Helix 18	AB9	A	559	583	Right-handed alpha
Helix 19	AC1	A	604	616	Right-handed alpha
Helix 20	AC2	A	626	657	Right-handed alpha
Helix 21	AC3	A	669	674	Right-handed alpha
Helix 22	AC4	A	688	696	Right-handed alpha
Helix 23	AC5	A	699	707	Right-handed alpha
Helix 24	AC6	A	713	723	Right-handed alpha
Helix 25	AC7	A	733	743	Right-handed alpha
Helix 26	AC8	A	768	782	Right-handed alpha
Helix 27	AC9	A	784	793	Right-handed alpha
Helix 28	AD1	A	813	837	Right-handed alpha
Helix 29	AD2	B	46	56	Right-handed alpha
Helix 30	AD3	B	77	93	Right-handed alpha
Helix 31	AD4	B	107	119	Right-handed alpha
Helix 32	AD5	B	149	165	Right-handed alpha
Helix 33	AD6	B	178	191	Right-handed alpha
Helix 34	AD7	B	212	221	Right-handed alpha
Helix 35	AD8	B	233	248	Right-handed alpha
Helix 36	AD9	B	259	264	Right-handed alpha
Helix 37	AE1	B	288	312	Right-handed alpha
Helix 38	AE2	B	323	328	Right-handed alpha
Helix 39	AE3	B	332	340	Right-handed alpha
Helix 40	AE4	B	459	473	Right-handed alpha
Helix 41	AE5	B	495	503	Right-handed alpha
Helix 42	AE6	B	555	576	Right-handed alpha
Helix 43	AE7	B	601	614	Right-handed alpha
Helix 44	AE8	B	625	654	Right-handed alpha
Helix 45	AE9	B	668	673	Right-handed alpha
Helix 46	AF1	B	689	699	Right-handed alpha
Helix 47	AF2	B	699	707	Right-handed alpha
Helix 48	AF3	B	708	710	Right-handed 310
Helix 49	AF4	B	713	724	Right-handed alpha
Helix 50	AF5	B	733	742	Right-handed alpha
Helix 51	AF6	B	771	786	Right-handed alpha
Helix 52	AF7	B	788	797	Right-handed alpha
Helix 53	AF8	B	819	838	Right-handed alpha
Helix 54	AF9	C	35	44	Right-handed alpha
Helix 55	AG1	C	71	76	Right-handed alpha
Helix 56	AG2	C	77	82	Right-handed alpha
Helix 57	AG3	C	83	85	Right-handed 310
Helix 58	AG4	C	103	115	Right-handed alpha
Helix 59	AG5	C	143	145	Right-handed 310
Helix 60	AG6	C	146	157	Right-handed alpha
Helix 61	AG7	C	170	182	Right-handed alpha
Helix 62	AG8	C	205	210	Right-handed alpha
Helix 63	AG9	C	224	235	Right-handed alpha
Helix 64	AH1	C	255	259	Right-handed 310
Helix 65	AH2	C	277	296	Right-handed alpha
Helix 66	AH3	C	317	328	Right-handed alpha
Helix 67	AH4	C	415	419	Right-handed 310
Helix 68	AH5	C	457	471	Right-handed alpha
Helix 69	AH6	C	499	508	Right-handed alpha
Helix 70	AH7	C	520	525	Right-handed alpha
Helix 71	AH8	C	562	580	Right-handed alpha
Helix 72	AH9	C	602	615	Right-handed alpha
Helix 73	AI1	C	628	658	Right-handed alpha
Helix 74	AI2	C	665	668	Right-handed 310
Helix 75	AI3	C	669	674	Right-handed alpha
Helix 76	AI4	C	687	693	Right-handed alpha
Helix 77	AI5	C	696	698	Right-handed 310
Helix 78	AI6	C	699	707	Right-handed alpha
Helix 79	AI7	C	713	723	Right-handed alpha
Helix 80	AI8	C	733	743	Right-handed alpha
Helix 81	AI9	C	767	783	Right-handed alpha
Helix 82	AJ1	C	783	792	Right-handed alpha
Helix 83	AJ2	C	809	836	Right-handed alpha
Helix 84	AJ3	D	59	63	Right-handed 310
Helix 85	AJ4	D	64	75	Right-handed alpha
Helix 86	AJ5	D	97	110	Right-handed alpha
Helix 87	AJ6	D	125	138	Right-handed alpha
Helix 88	AJ7	D	167	182	Right-handed alpha
Helix 89	AJ8	D	196	208	Right-handed alpha
Helix 90	AJ9	D	228	237	Right-handed alpha
Helix 91	AK1	D	249	263	Right-handed alpha
Helix 92	AK2	D	316	338	Right-handed alpha
Helix 93	AK3	D	487	500	Right-handed alpha
Helix 94	AK4	D	523	530	Right-handed alpha
Helix 95	AK5	D	543	548	Right-handed alpha
Helix 96	AK6	D	582	606	Right-handed alpha
Helix 97	AK7	D	627	641	Right-handed alpha
Helix 98	AK8	D	652	681	Right-handed alpha
Helix 99	AK9	D	695	700	Right-handed alpha
Helix 100	AL1	D	716	726	Right-handed alpha
Helix 101	AL2	D	726	734	Right-handed alpha
Helix 102	AL3	D	735	737	Right-handed 310
Helix 103	AL4	D	740	750	Right-handed alpha
Helix 104	AL5	D	759	769	Right-handed alpha
Helix 105	AL6	D	770	773	Right-handed 310
Helix 106	AL7	D	799	813	Right-handed alpha
Helix 107	AL8	D	814	822	Right-handed alpha
Helix 108	AL9	D	842	844	Right-handed 310
Helix 109	AM1	D	845	872	Right-handed alpha

There are 33 sheets in PDB entry 9D39. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	64	first strand
Strand 2	A	26	31	parallel
Strand 3	A	87	91	parallel
Strand 4	A	118	120	parallel
Strand 5	A	138	139	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	197	first strand
Strand 2	A	163	168	parallel
Strand 3	A	218	222	parallel
Strand 4	A	246	249	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	270	271	first strand
Strand 2	A	351	353	anti-parallel
Strand 3	A	365	367	anti-parallel
Strand 4	A	372	374	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	339	340	first strand
Strand 2	A	346	347	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	356	357	first strand
Strand 2	A	360	361	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	473	478	first strand
Strand 2	A	397	402	parallel
Strand 3	A	512	513	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	410	413	first strand
Strand 2	A	452	456	anti-parallel
Strand 3	A	433	437	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	485	488	first strand
Strand 2	A	497	500	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	729	732	first strand
Strand 2	A	538	543	anti-parallel
Strand 3	A	746	748	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	41	first strand
Strand 2	B	97	100	parallel
Strand 3	B	123	127	parallel
Strand 4	B	143	144	parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	198	204	first strand
Strand 2	B	168	173	parallel
Strand 3	B	227	230	parallel
Strand 4	B	255	258	parallel
Strand 5	B	278	282	parallel
Strand 6	B	362	367	anti-parallel
Strand 7	B	373	380	anti-parallel
Strand 8	B	383	386	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	343	344	first strand
Strand 2	B	347	348	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	405	406	first strand
Strand 2	B	475	476	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	455	457	first strand
Strand 2	B	434	438	anti-parallel
Strand 3	B	479	480	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	508	514	first strand
Strand 2	B	762	766	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	683	684	first strand
Strand 2	B	728	732	parallel
Strand 3	B	534	539	anti-parallel
Strand 4	B	748	749	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	32	first strand
Strand 2	C	87	92	parallel
Strand 3	C	118	120	parallel
Strand 4	C	138	139	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	196	197	first strand
Strand 2	C	165	168	parallel
Strand 3	C	220	221	parallel
Strand 4	C	248	249	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	356	first strand
Strand 2	C	361	363	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	366	367	first strand
Strand 2	C	371	372	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	397	402	first strand
Strand 2	C	473	478	parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	410	413	first strand
Strand 2	C	450	456	anti-parallel
Strand 3	C	434	439	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	488	489	first strand
Strand 2	C	496	497	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	512	513	first strand
Strand 2	C	761	763	anti-parallel
Strand 3	C	527	528	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	730	732	first strand
Strand 2	C	538	543	anti-parallel
Strand 3	C	746	749	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	86	87	first strand
Strand 2	D	53	58	parallel
Strand 3	D	115	119	parallel
Strand 4	D	141	145	parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	188	191	first strand
Strand 2	D	243	247	parallel
Strand 3	D	271	274	parallel
Strand 4	D	305	306	parallel
Strand 5	D	387	392	anti-parallel
Strand 6	D	398	404	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	368	369	first strand
Strand 2	D	372	373	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	431	436	first strand
Strand 2	D	502	507	parallel
Strand 3	D	463	464	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	443	446	first strand
Strand 2	D	483	486	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	515	516	first strand
Strand 2	D	521	522	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	564	566	first strand
Strand 2	D	775	777	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	710	711	first strand
Strand 2	D	755	756	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9D39

Analysis of interatomic Contacts of Structural Units in PDB entry:
9D39