Analysis of interatomic Contacts of Structural Units in PDB entry:
9D3A

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9D3A entry

There are 4 chains in PDB entry 9D3A (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 25	TYR 837
B	SER 34	LEU 841
C	LYS 25	ARG 839
D	ASN 52	ARG 872

There are122 helices in PDB entry 9D3A. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	53	Right-handed alpha
Helix 2	AA2	A	71	82	Right-handed alpha
Helix 3	AA3	A	83	86	Right-handed 310
Helix 4	AA4	A	104	112	Right-handed alpha
Helix 5	AA5	A	113	115	Right-handed 310
Helix 6	AA6	A	126	130	Right-handed 310
Helix 7	AA7	A	143	146	Right-handed 310
Helix 8	AA8	A	147	158	Right-handed alpha
Helix 9	AA9	A	170	186	Right-handed alpha
Helix 10	AB1	A	205	211	Right-handed alpha
Helix 11	AB2	A	227	238	Right-handed alpha
Helix 12	AB3	A	256	261	Right-handed 310
Helix 13	AB4	A	276	297	Right-handed alpha
Helix 14	AB5	A	317	327	Right-handed alpha
Helix 15	AB6	A	458	470	Right-handed alpha
Helix 16	AB7	A	501	506	Right-handed alpha
Helix 17	AB8	A	520	525	Right-handed alpha
Helix 18	AB9	A	559	583	Right-handed alpha
Helix 19	AC1	A	603	616	Right-handed alpha
Helix 20	AC2	A	626	657	Right-handed alpha
Helix 21	AC3	A	669	674	Right-handed alpha
Helix 22	AC4	A	688	696	Right-handed alpha
Helix 23	AC5	A	699	707	Right-handed alpha
Helix 24	AC6	A	713	723	Right-handed alpha
Helix 25	AC7	A	733	740	Right-handed alpha
Helix 26	AC8	A	768	776	Right-handed alpha
Helix 27	AC9	A	784	792	Right-handed alpha
Helix 28	AD1	A	813	837	Right-handed alpha
Helix 29	AD2	B	46	53	Right-handed alpha
Helix 30	AD3	B	77	92	Right-handed alpha
Helix 31	AD4	B	107	119	Right-handed alpha
Helix 32	AD5	B	127	132	Right-handed 310
Helix 33	AD6	B	149	164	Right-handed alpha
Helix 34	AD7	B	178	192	Right-handed alpha
Helix 35	AD8	B	212	222	Right-handed alpha
Helix 36	AD9	B	233	248	Right-handed alpha
Helix 37	AE1	B	259	264	Right-handed alpha
Helix 38	AE2	B	288	311	Right-handed alpha
Helix 39	AE3	B	332	338	Right-handed alpha
Helix 40	AE4	B	459	473	Right-handed alpha
Helix 41	AE5	B	496	502	Right-handed alpha
Helix 42	AE6	B	516	521	Right-handed alpha
Helix 43	AE7	B	555	576	Right-handed alpha
Helix 44	AE8	B	601	612	Right-handed alpha
Helix 45	AE9	B	613	615	Right-handed 310
Helix 46	AF1	B	625	656	Right-handed alpha
Helix 47	AF2	B	668	673	Right-handed alpha
Helix 48	AF3	B	692	699	Right-handed alpha
Helix 49	AF4	B	699	704	Right-handed alpha
Helix 50	AF5	B	713	724	Right-handed alpha
Helix 51	AF6	B	734	741	Right-handed alpha
Helix 52	AF7	B	742	747	Right-handed 310
Helix 53	AF8	B	772	786	Right-handed alpha
Helix 54	AF9	B	787	797	Right-handed alpha
Helix 55	AG1	B	819	830	Right-handed alpha
Helix 56	AG2	B	830	841	Right-handed alpha
Helix 57	AG3	C	35	38	Right-handed 310
Helix 58	AG4	C	39	47	Right-handed alpha
Helix 59	AG5	C	48	52	Right-handed 310
Helix 60	AG6	C	70	75	Right-handed alpha
Helix 61	AG7	C	76	78	Right-handed 310
Helix 62	AG8	C	82	86	Right-handed 310
Helix 63	AG9	C	103	114	Right-handed alpha
Helix 64	AH1	C	143	155	Right-handed alpha
Helix 65	AH2	C	170	189	Right-handed alpha
Helix 66	AH3	C	205	209	Right-handed 310
Helix 67	AH4	C	210	214	Right-handed 310
Helix 68	AH5	C	226	238	Right-handed alpha
Helix 69	AH6	C	251	254	Right-handed 310
Helix 70	AH7	C	255	260	Right-handed 310
Helix 71	AH8	C	276	296	Right-handed alpha
Helix 72	AH9	C	316	327	Right-handed alpha
Helix 73	AI1	C	415	419	Right-handed 310
Helix 74	AI2	C	457	470	Right-handed alpha
Helix 75	AI3	C	499	508	Right-handed alpha
Helix 76	AI4	C	520	525	Right-handed alpha
Helix 77	AI5	C	559	584	Right-handed alpha
Helix 78	AI6	C	602	616	Right-handed alpha
Helix 79	AI7	C	626	651	Right-handed alpha
Helix 80	AI8	C	652	656	Right-handed 310
Helix 81	AI9	C	669	674	Right-handed alpha
Helix 82	AJ1	C	687	696	Right-handed alpha
Helix 83	AJ2	C	702	707	Right-handed alpha
Helix 84	AJ3	C	713	723	Right-handed alpha
Helix 85	AJ4	C	735	743	Right-handed alpha
Helix 86	AJ5	C	766	770	Right-handed 310
Helix 87	AJ6	C	773	782	Right-handed alpha
Helix 88	AJ7	C	784	793	Right-handed alpha
Helix 89	AJ8	C	814	823	Right-handed alpha
Helix 90	AJ9	C	823	839	Right-handed alpha
Helix 91	AK1	D	59	63	Right-handed 310
Helix 92	AK2	D	68	75	Right-handed alpha
Helix 93	AK3	D	97	111	Right-handed alpha
Helix 94	AK4	D	123	125	Right-handed 310
Helix 95	AK5	D	126	138	Right-handed alpha
Helix 96	AK6	D	146	150	Right-handed 310
Helix 97	AK7	D	167	182	Right-handed alpha
Helix 98	AK8	D	196	209	Right-handed alpha
Helix 99	AK9	D	224	227	Right-handed 310
Helix 100	AL1	D	228	236	Right-handed alpha
Helix 101	AL2	D	252	264	Right-handed alpha
Helix 102	AL3	D	316	336	Right-handed alpha
Helix 103	AL4	D	343	347	Right-handed 310
Helix 104	AL5	D	486	499	Right-handed alpha
Helix 105	AL6	D	523	530	Right-handed alpha
Helix 106	AL7	D	573	578	Right-handed 310
Helix 107	AL8	D	582	588	Right-handed alpha
Helix 108	AL9	D	588	605	Right-handed alpha
Helix 109	AM1	D	628	637	Right-handed alpha
Helix 110	AM2	D	638	640	Right-handed 310
Helix 111	AM3	D	654	683	Right-handed alpha
Helix 112	AM4	D	695	700	Right-handed alpha
Helix 113	AM5	D	701	704	Right-handed 310
Helix 114	AM6	D	716	724	Right-handed alpha
Helix 115	AM7	D	726	734	Right-handed alpha
Helix 116	AM8	D	743	750	Right-handed alpha
Helix 117	AM9	D	759	767	Right-handed alpha
Helix 118	AN1	D	779	781	Right-handed 310
Helix 119	AN2	D	799	813	Right-handed alpha
Helix 120	AN3	D	814	823	Right-handed alpha
Helix 121	AN4	D	840	845	Right-handed alpha
Helix 122	AN5	D	845	872	Right-handed alpha

There are 27 sheets in PDB entry 9D3A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	120	first strand
Strand 2	A	137	139	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	195	first strand
Strand 2	A	164	167	parallel
Strand 3	A	218	222	parallel
Strand 4	A	246	247	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	268	271	first strand
Strand 2	A	350	357	anti-parallel
Strand 3	A	360	368	anti-parallel
Strand 4	A	371	374	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	400	402	first strand
Strand 2	A	476	478	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	409	412	first strand
Strand 2	A	450	457	anti-parallel
Strand 3	A	434	439	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	487	489	first strand
Strand 2	A	496	498	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	681	682	first strand
Strand 2	A	728	732	parallel
Strand 3	A	538	542	anti-parallel
Strand 4	A	747	749	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	72	first strand
Strand 2	B	35	41	parallel
Strand 3	B	94	99	parallel
Strand 4	B	123	125	parallel
Strand 5	B	143	145	parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	198	200	first strand
Strand 2	B	168	173	parallel
Strand 3	B	227	231	parallel
Strand 4	B	255	258	parallel
Strand 5	B	278	282	parallel
Strand 6	B	362	366	anti-parallel
Strand 7	B	374	379	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	405	410	first strand
Strand 2	B	475	480	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	418	420	first strand
Strand 2	B	455	458	anti-parallel
Strand 3	B	434	436	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	683	684	first strand
Strand 2	B	728	731	parallel
Strand 3	B	535	538	anti-parallel
Strand 4	B	749	750	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	66	first strand
Strand 2	C	30	33	parallel
Strand 3	C	90	92	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	119	120	first strand
Strand 2	C	138	139	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	194	197	first strand
Strand 2	C	165	168	parallel
Strand 3	C	220	221	parallel
Strand 4	C	248	249	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	400	402	first strand
Strand 2	C	476	478	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	412	413	first strand
Strand 2	C	449	455	anti-parallel
Strand 3	C	434	440	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	487	488	first strand
Strand 2	C	497	498	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	527	528	first strand
Strand 2	C	762	763	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	681	682	first strand
Strand 2	C	728	732	parallel
Strand 3	C	538	543	anti-parallel
Strand 4	C	746	749	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	54	57	first strand
Strand 2	D	115	118	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	141	143	first strand
Strand 2	D	161	163	parallel

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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	188	189	first strand
Strand 2	D	243	246	parallel
Strand 3	D	271	274	parallel
Strand 4	D	304	307	parallel
Strand 5	D	388	392	anti-parallel
Strand 6	D	398	403	anti-parallel
Strand 7	D	410	411	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	434	435	first strand
Strand 2	D	535	536	parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	444	447	first strand
Strand 2	D	482	485	anti-parallel
Strand 3	D	460	461	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	515	516	first strand
Strand 2	D	521	522	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	710	711	first strand
Strand 2	D	755	758	parallel
Strand 3	D	562	566	anti-parallel
Strand 4	D	775	777	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9D3A

Analysis of interatomic Contacts of Structural Units in PDB entry:
9D3A