Analysis of interatomic Contacts of Structural Units in PDB entry:
9D3C

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9D3C entry

There are 4 chains in PDB entry 9D3C (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 25	LYS 841
B	SER 34	GLN 845
C	LYS 25	LYS 841
D	LEU 51	ARG 872

There are119 helices in PDB entry 9D3C. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	39	53	Right-handed alpha
Helix 2	AA2	A	73	80	Right-handed alpha
Helix 3	AA3	A	82	86	Right-handed 310
Helix 4	AA4	A	105	114	Right-handed alpha
Helix 5	AA5	A	143	146	Right-handed 310
Helix 6	AA6	A	147	158	Right-handed alpha
Helix 7	AA7	A	170	185	Right-handed alpha
Helix 8	AA8	A	204	209	Right-handed alpha
Helix 9	AA9	A	210	214	Right-handed 310
Helix 10	AB1	A	224	238	Right-handed alpha
Helix 11	AB2	A	251	255	Right-handed 310
Helix 12	AB3	A	258	262	Right-handed 310
Helix 13	AB4	A	276	296	Right-handed alpha
Helix 14	AB5	A	317	327	Right-handed alpha
Helix 15	AB6	A	381	385	Right-handed 310
Helix 16	AB7	A	459	467	Right-handed alpha
Helix 17	AB8	A	499	507	Right-handed alpha
Helix 18	AB9	A	520	525	Right-handed alpha
Helix 19	AC1	A	559	580	Right-handed alpha
Helix 20	AC2	A	602	616	Right-handed alpha
Helix 21	AC3	A	626	657	Right-handed alpha
Helix 22	AC4	A	669	674	Right-handed alpha
Helix 23	AC5	A	688	696	Right-handed alpha
Helix 24	AC6	A	700	707	Right-handed alpha
Helix 25	AC7	A	715	722	Right-handed alpha
Helix 26	AC8	A	733	744	Right-handed alpha
Helix 27	AC9	A	768	781	Right-handed alpha
Helix 28	AD1	A	783	793	Right-handed alpha
Helix 29	AD2	A	819	827	Right-handed alpha
Helix 30	AD3	A	827	841	Right-handed alpha
Helix 31	AD4	B	49	57	Right-handed alpha
Helix 32	AD5	B	77	92	Right-handed alpha
Helix 33	AD6	B	107	119	Right-handed alpha
Helix 34	AD7	B	127	131	Right-handed 310
Helix 35	AD8	B	149	159	Right-handed alpha
Helix 36	AD9	B	179	191	Right-handed alpha
Helix 37	AE1	B	214	220	Right-handed alpha
Helix 38	AE2	B	233	248	Right-handed alpha
Helix 39	AE3	B	288	311	Right-handed alpha
Helix 40	AE4	B	334	339	Right-handed alpha
Helix 41	AE5	B	459	473	Right-handed alpha
Helix 42	AE6	B	495	503	Right-handed alpha
Helix 43	AE7	B	517	522	Right-handed 310
Helix 44	AE8	B	555	577	Right-handed alpha
Helix 45	AE9	B	601	614	Right-handed alpha
Helix 46	AF1	B	625	655	Right-handed alpha
Helix 47	AF2	B	668	673	Right-handed alpha
Helix 48	AF3	B	690	699	Right-handed alpha
Helix 49	AF4	B	699	706	Right-handed alpha
Helix 50	AF5	B	707	710	Right-handed 310
Helix 51	AF6	B	713	723	Right-handed alpha
Helix 52	AF7	B	733	742	Right-handed alpha
Helix 53	AF8	B	772	786	Right-handed alpha
Helix 54	AF9	B	788	797	Right-handed alpha
Helix 55	AG1	B	818	845	Right-handed alpha
Helix 56	AG2	C	37	54	Right-handed alpha
Helix 57	AG3	C	72	75	Right-handed 310
Helix 58	AG4	C	76	81	Right-handed alpha
Helix 59	AG5	C	82	85	Right-handed 310
Helix 60	AG6	C	103	114	Right-handed alpha
Helix 61	AG7	C	143	146	Right-handed 310
Helix 62	AG8	C	147	158	Right-handed alpha
Helix 63	AG9	C	170	183	Right-handed alpha
Helix 64	AH1	C	205	211	Right-handed alpha
Helix 65	AH2	C	224	237	Right-handed alpha
Helix 66	AH3	C	251	254	Right-handed 310
Helix 67	AH4	C	255	259	Right-handed 310
Helix 68	AH5	C	277	291	Right-handed alpha
Helix 69	AH6	C	292	296	Right-handed 310
Helix 70	AH7	C	317	326	Right-handed alpha
Helix 71	AH8	C	458	471	Right-handed alpha
Helix 72	AH9	C	500	508	Right-handed alpha
Helix 73	AI1	C	522	525	Right-handed 310
Helix 74	AI2	C	545	549	Right-handed 310
Helix 75	AI3	C	559	583	Right-handed alpha
Helix 76	AI4	C	602	616	Right-handed alpha
Helix 77	AI5	C	628	652	Right-handed alpha
Helix 78	AI6	C	653	656	Right-handed 310
Helix 79	AI7	C	669	674	Right-handed alpha
Helix 80	AI8	C	687	694	Right-handed alpha
Helix 81	AI9	C	702	707	Right-handed alpha
Helix 82	AJ1	C	708	710	Right-handed 310
Helix 83	AJ2	C	713	723	Right-handed alpha
Helix 84	AJ3	C	733	740	Right-handed alpha
Helix 85	AJ4	C	774	780	Right-handed alpha
Helix 86	AJ5	C	783	791	Right-handed alpha
Helix 87	AJ6	C	815	838	Right-handed alpha
Helix 88	AJ7	D	59	61	Right-handed 310
Helix 89	AJ8	D	62	77	Right-handed alpha
Helix 90	AJ9	D	95	110	Right-handed alpha
Helix 91	AK1	D	125	136	Right-handed alpha
Helix 92	AK2	D	146	150	Right-handed 310
Helix 93	AK3	D	167	183	Right-handed alpha
Helix 94	AK4	D	198	202	Right-handed 310
Helix 95	AK5	D	203	208	Right-handed alpha
Helix 96	AK6	D	231	235	Right-handed 310
Helix 97	AK7	D	252	262	Right-handed alpha
Helix 98	AK8	D	318	338	Right-handed alpha
Helix 99	AK9	D	343	347	Right-handed 310
Helix 100	AL1	D	486	500	Right-handed alpha
Helix 101	AL2	D	522	529	Right-handed alpha
Helix 102	AL3	D	543	548	Right-handed alpha
Helix 103	AL4	D	584	607	Right-handed alpha
Helix 104	AL5	D	628	639	Right-handed alpha
Helix 105	AL6	D	652	681	Right-handed alpha
Helix 106	AL7	D	695	700	Right-handed alpha
Helix 107	AL8	D	716	721	Right-handed alpha
Helix 108	AL9	D	722	725	Right-handed 310
Helix 109	AM1	D	726	734	Right-handed alpha
Helix 110	AM2	D	735	737	Right-handed 310
Helix 111	AM3	D	741	751	Right-handed alpha
Helix 112	AM4	D	760	767	Right-handed alpha
Helix 113	AM5	D	770	773	Right-handed 310
Helix 114	AM6	D	778	782	Right-handed alpha
Helix 115	AM7	D	799	813	Right-handed alpha
Helix 116	AM8	D	814	824	Right-handed alpha
Helix 117	AM9	D	842	846	Right-handed 310
Helix 118	AN1	D	848	864	Right-handed alpha
Helix 119	AN2	D	865	870	Right-handed alpha

There are 27 sheets in PDB entry 9D3C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	33	first strand
Strand 2	A	61	66	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	91	first strand
Strand 2	A	118	120	parallel
Strand 3	A	138	139	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	197	first strand
Strand 2	A	164	168	parallel
Strand 3	A	218	222	parallel
Strand 4	A	246	249	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	271	first strand
Strand 2	A	351	357	anti-parallel
Strand 3	A	360	367	anti-parallel
Strand 4	A	372	374	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	409	413	first strand
Strand 2	A	453	457	anti-parallel
Strand 3	A	434	437	anti-parallel
Strand 4	A	473	478	parallel
Strand 5	A	397	402	parallel
Strand 6	A	512	513	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	487	490	first strand
Strand 2	A	495	498	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	681	682	first strand
Strand 2	A	728	732	parallel
Strand 3	A	538	542	anti-parallel
Strand 4	A	747	749	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	70	73	first strand
Strand 2	B	38	42	parallel
Strand 3	B	97	101	parallel
Strand 4	B	123	125	parallel
Strand 5	B	143	144	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	198	199	first strand
Strand 2	B	168	173	parallel
Strand 3	B	203	204	parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	198	199	first strand
Strand 2	B	168	173	parallel
Strand 3	B	227	229	parallel
Strand 4	B	255	258	parallel
Strand 5	B	278	282	parallel
Strand 6	B	362	367	anti-parallel
Strand 7	B	373	380	anti-parallel
Strand 8	B	383	386	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	408	410	first strand
Strand 2	B	478	480	parallel
Strand 3	B	434	437	parallel
Strand 4	B	455	458	anti-parallel
Strand 5	B	418	420	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	508	509	first strand
Strand 2	B	765	766	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	531	532	first strand
Strand 2	B	760	761	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	729	732	first strand
Strand 2	B	534	539	anti-parallel
Strand 3	B	748	750	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	66	first strand
Strand 2	C	28	33	parallel
Strand 3	C	87	93	parallel
Strand 4	C	118	121	parallel
Strand 5	C	138	139	parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	196	197	first strand
Strand 2	C	164	168	parallel
Strand 3	C	218	221	parallel
Strand 4	C	246	249	parallel
Strand 5	C	266	268	parallel
Strand 6	C	354	357	anti-parallel
Strand 7	C	360	363	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	398	400	first strand
Strand 2	C	474	477	parallel
Strand 3	C	434	437	parallel
Strand 4	C	453	457	anti-parallel
Strand 5	C	409	412	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	512	513	first strand
Strand 2	C	761	763	anti-parallel
Strand 3	C	527	528	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	535	536	first strand
Strand 2	C	756	757	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	681	682	first strand
Strand 2	C	728	732	parallel
Strand 3	C	538	543	anti-parallel
Strand 4	C	746	749	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	54	57	first strand
Strand 2	D	115	118	parallel
Strand 3	D	141	143	parallel
Strand 4	D	161	162	parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	188	191	first strand
Strand 2	D	244	247	parallel
Strand 3	D	272	274	parallel
Strand 4	D	304	307	parallel
Strand 5	D	389	393	anti-parallel
Strand 6	D	397	399	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	368	369	first strand
Strand 2	D	372	373	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	431	433	first strand
Strand 2	D	502	504	parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	444	446	first strand
Strand 2	D	482	485	anti-parallel
Strand 3	D	460	462	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	757	758	first strand
Strand 2	D	558	566	anti-parallel
Strand 3	D	775	777	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	757	758	first strand
Strand 2	D	558	566	anti-parallel
Strand 3	D	784	788	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9D3C

Analysis of interatomic Contacts of Structural Units in PDB entry:
9D3C