Analysis of interatomic Contacts of Structural Units in PDB entry:
9D3H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9D3H entry

There are 2 chains in PDB entry 9D3H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1ARG 335
B
 ALA 0ARG 335
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 9D3H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 26Right-handed alpha
Helix 2
AA2
A
46 58Right-handed alpha
Helix 3
AA3
A
71 78Right-handed alpha
Helix 4
AA4
A
82 84Right-handed 310
Helix 5
AA5
A
85 93Right-handed alpha
Helix 6
AA6
A
109 114Right-handed alpha
Helix 7
AA7
A
126 137Right-handed alpha
Helix 8
AA8
A
155 164Right-handed alpha
Helix 9
AA9
A
201 209Right-handed alpha
Helix 10
AB1
A
215 221Right-handed alpha
Helix 11
AB2
A
248 250Right-handed 310
Helix 12
AB3
A
251 259Right-handed alpha
Helix 13
AB4
A
269 271Right-handed 310
Helix 14
AB5
A
285 301Right-handed alpha
Helix 15
AB6
A
316 330Right-handed alpha
Helix 16
AB7
B
13 26Right-handed alpha
Helix 17
AB8
B
46 58Right-handed alpha
Helix 18
AB9
B
71 78Right-handed alpha
Helix 19
AC1
B
82 84Right-handed 310
Helix 20
AC2
B
85 93Right-handed alpha
Helix 21
AC3
B
109 114Right-handed alpha
Helix 22
AC4
B
126 137Right-handed alpha
Helix 23
AC5
B
155 164Right-handed alpha
Helix 24
AC6
B
201 209Right-handed alpha
Helix 25
AC7
B
215 221Right-handed alpha
Helix 26
AC8
B
248 250Right-handed 310
Helix 27
AC9
B
251 259Right-handed alpha
Helix 28
AD1
B
269 274Right-handed 310
Helix 29
AD2
B
285 302Right-handed alpha
Helix 30
AD3
B
317 330Right-handed alpha
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There are 7 sheets in PDB entry 9D3H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 6first strand
Strand 2
A
169 172parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 32first strand
Strand 2
A
39 43anti-parallel
Strand 3
A
140 141anti-parallel
Strand 4
A
66 68anti-parallel
Strand 5
A
118 122parallel
Strand 6
A
97 103anti-parallel
Strand 7
A
79 80anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 32first strand
Strand 2
A
39 43anti-parallel
Strand 3
A
140 141anti-parallel
Strand 4
A
66 68anti-parallel
Strand 5
A
118 122parallel
Strand 6
A
97 103anti-parallel
Strand 7
A
183 186parallel
Strand 8
A
193 196anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
277 281first strand
Strand 2
A
262 267parallel
Strand 3
A
307 311parallel
Strand 4
A
243 246parallel
Strand 5
A
332 334parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 6first strand
Strand 2
B
169 172parallel
Strand 3
B
30 32parallel
Strand 4
B
39 43anti-parallel
Strand 5
B
140 142anti-parallel
Strand 6
B
66 68anti-parallel
Strand 7
B
118 122parallel
Strand 8
B
97 103anti-parallel
Strand 9
B
79 80anti-parallel
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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 6first strand
Strand 2
B
169 172parallel
Strand 3
B
30 32parallel
Strand 4
B
39 43anti-parallel
Strand 5
B
140 142anti-parallel
Strand 6
B
66 68anti-parallel
Strand 7
B
118 122parallel
Strand 8
B
97 103anti-parallel
Strand 9
B
183 186parallel
Strand 10
B
193 196anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
277 281first strand
Strand 2
B
262 267parallel
Strand 3
B
307 311parallel
Strand 4
B
243 246parallel
Strand 5
B
332 334parallel
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