Analysis of interatomic Contacts of Structural Units in PDB entry:
9D3X


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9D3X entry

There are 2 chains in PDB entry 9D3X (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 8CYS 696
B
 ASP 14LEU 734
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 55 helices in PDB entry 9D3X. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 42Right-handed alpha
Helix 2
AA2
A
47 69Right-handed alpha
Helix 3
AA3
A
75 89Right-handed alpha
Helix 4
AA4
A
91 112Right-handed alpha
Helix 5
AA5
A
114 124Right-handed alpha
Helix 6
AA6
A
140 161Right-handed alpha
Helix 7
AA7
A
162 171Right-handed alpha
Helix 8
AA8
A
194 202Right-handed alpha
Helix 9
AA9
A
215 233Right-handed alpha
Helix 10
AB1
A
242 266Right-handed alpha
Helix 11
AB2
A
270 296Right-handed alpha
Helix 12
AB3
A
316 333Right-handed alpha
Helix 13
AB4
A
362 376Right-handed alpha
Helix 14
AB5
A
384 392Right-handed alpha
Helix 15
AB6
A
428 436Right-handed alpha
Helix 16
AB7
A
439 466Right-handed alpha
Helix 17
AB8
A
467 468Right-handed 310
Helix 18
AB9
A
469 472Right-handed 310
Helix 19
AC1
A
473 478Right-handed alpha
Helix 20
AC2
A
491 496Right-handed 310
Helix 21
AC3
A
509 519Right-handed alpha
Helix 22
AC4
A
521 524Right-handed 310
Helix 23
AC5
A
525 551Right-handed alpha
Helix 24
AC6
A
563 577Right-handed alpha
Helix 25
AC7
A
601 610Right-handed alpha
Helix 26
AC8
A
610 616Right-handed alpha
Helix 27
AC9
A
627 631Right-handed 310
Helix 28
AD1
A
633 646Right-handed alpha
Helix 29
AD2
B
29 42Right-handed alpha
Helix 30
AD3
B
47 69Right-handed alpha
Helix 31
AD4
B
75 89Right-handed alpha
Helix 32
AD5
B
91 111Right-handed alpha
Helix 33
AD6
B
140 161Right-handed alpha
Helix 34
AD7
B
162 172Right-handed alpha
Helix 35
AD8
B
194 202Right-handed alpha
Helix 36
AD9
B
215 232Right-handed alpha
Helix 37
AE1
B
242 266Right-handed alpha
Helix 38
AE2
B
267 269Right-handed 310
Helix 39
AE3
B
270 295Right-handed alpha
Helix 40
AE4
B
316 333Right-handed alpha
Helix 41
AE5
B
362 377Right-handed alpha
Helix 42
AE6
B
384 392Right-handed alpha
Helix 43
AE7
B
428 437Right-handed alpha
Helix 44
AE8
B
439 467Right-handed alpha
Helix 45
AE9
B
468 472Right-handed 310
Helix 46
AF1
B
473 478Right-handed alpha
Helix 47
AF2
B
491 496Right-handed 310
Helix 48
AF3
B
509 519Right-handed alpha
Helix 49
AF4
B
521 524Right-handed 310
Helix 50
AF5
B
525 551Right-handed alpha
Helix 51
AF6
B
563 577Right-handed alpha
Helix 52
AF7
B
601 610Right-handed alpha
Helix 53
AF8
B
610 616Right-handed alpha
Helix 54
AF9
B
633 646Right-handed alpha
Helix 55
AG1
B
708 717Right-handed alpha
Back to top of page

There are 12 sheets in PDB entry 9D3X. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 26first strand
Strand 2
A
16 18anti-parallel
Strand 3
A
72 74parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 176first strand
Strand 2
A
421 427anti-parallel
Strand 3
A
502 507parallel
Strand 4
A
553 558parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 192first strand
Strand 2
A
238 240parallel
Strand 3
A
307 311parallel
Strand 4
A
345 350parallel
Strand 5
A
380 383parallel
Strand 6
A
650 652anti-parallel
Strand 7
A
623 624parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 205first strand
Strand 2
A
208 210anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
665 667first strand
Strand 2
A
658 660anti-parallel
Strand 3
A
689 690anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
24 25first strand
Strand 2
B
16 18anti-parallel
Strand 3
B
72 74parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
174 176first strand
Strand 2
B
421 427anti-parallel
Strand 3
B
502 507parallel
Strand 4
B
553 558parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
191 192first strand
Strand 2
B
238 240parallel
Strand 3
B
307 311parallel
Strand 4
B
345 350parallel
Strand 5
B
380 383parallel
Strand 6
B
650 654anti-parallel
Strand 7
B
623 626parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
203 205first strand
Strand 2
B
208 210anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
689 690first strand
Strand 2
B
658 660anti-parallel
Strand 3
B
666 667anti-parallel
Strand 4
B
727 729anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
670 672first strand
Strand 2
B
675 677anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
693 694first strand
Strand 2
B
699 700anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il