Analysis of interatomic Contacts of Structural Units in PDB entry:
9D44


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9D44 entry

There is 1 chain in PDB entry 9D44 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 40GLU 499
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 9D44. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
56 60Right-handed 310
Helix 2
AA2
A
74 77Right-handed 310
Helix 3
AA3
A
88 92Right-handed 310
Helix 4
AA4
A
104 110Right-handed alpha
Helix 5
AA5
A
110 116Right-handed alpha
Helix 6
AA6
A
127 134Right-handed alpha
Helix 7
AA7
A
169 174Right-handed 310
Helix 8
AA8
A
186 190Right-handed 310
Helix 9
AA9
A
196 205Right-handed alpha
Helix 10
AB1
A
218 222Right-handed 310
Helix 11
AB2
A
223 242Right-handed alpha
Helix 12
AB3
A
256 264Right-handed alpha
Helix 13
AB4
A
309 323Right-handed alpha
Helix 14
AB5
A
324 329Right-handed 310
Helix 15
AB6
A
340 354Right-handed alpha
Helix 16
AB7
A
366 380Right-handed alpha
Helix 17
AB8
A
419 421Right-handed 310
Helix 18
AB9
A
453 468Right-handed alpha
Helix 19
AC1
A
471 483Right-handed alpha
Helix 20
AC2
A
488 498Right-handed alpha
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There are 7 sheets in PDB entry 9D44. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 47first strand
Strand 2
A
176 178anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
383 388first strand
Strand 2
A
391 399anti-parallel
Strand 3
A
63 72anti-parallel
Strand 4
A
423 428anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 84first strand
Strand 2
A
410 416anti-parallel
Strand 3
A
443 449anti-parallel
Strand 4
A
434 440anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 211first strand
Strand 2
A
162 164parallel
Strand 3
A
94 100parallel
Strand 4
A
332 336parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 211first strand
Strand 2
A
162 164parallel
Strand 3
A
94 100parallel
Strand 4
A
362 365parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 150first strand
Strand 2
A
156 158anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
249 251first strand
Strand 2
A
271 274parallel
Strand 3
A
293 296parallel
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