Analysis of interatomic Contacts of Structural Units in PDB entry:
9D45


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9D45 entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 5 chains in PDB entry 9D45 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 5THR 1164
B
 VAL 10GLU 180
C
 LEU 112TYR 113
C
 PRO 115ILE 127
C
 PRO 129THR 134
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 77 helices in PDB entry 9D45. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 18Right-handed alpha
Helix 2
AA2
A
22 38Right-handed alpha
Helix 3
AA3
A
41 53Right-handed alpha
Helix 4
AA4
A
56 73Right-handed alpha
Helix 5
AA5
A
79 96Right-handed alpha
Helix 6
AA6
A
102 121Right-handed alpha
Helix 7
AA7
A
122 127Right-handed 310
Helix 8
AA8
A
131 138Right-handed alpha
Helix 9
AA9
A
141 150Right-handed alpha
Helix 10
AB1
A
153 172Right-handed alpha
Helix 11
AB2
A
176 182Right-handed alpha
Helix 12
AB3
A
182 195Right-handed alpha
Helix 13
AB4
A
196 204Right-handed alpha
Helix 14
AB5
A
207 214Right-handed alpha
Helix 15
AB6
A
220 235Right-handed alpha
Helix 16
AB7
A
236 249Right-handed alpha
Helix 17
AB8
A
255 262Right-handed alpha
Helix 18
AB9
A
263 273Right-handed alpha
Helix 19
AC1
A
276 293Right-handed alpha
Helix 20
AC2
A
297 310Right-handed alpha
Helix 21
AC3
A
311 323Right-handed alpha
Helix 22
AC4
A
334 347Right-handed alpha
Helix 23
AC5
A
348 355Right-handed 310
Helix 24
AC6
A
360 374Right-handed alpha
Helix 25
AC7
A
377 382Right-handed alpha
Helix 26
AC8
A
384 394Right-handed alpha
Helix 27
AC9
A
397 403Right-handed alpha
Helix 28
AD1
A
405 416Right-handed alpha
Helix 29
AD2
A
419 423Right-handed 310
Helix 30
AD3
A
427 436Right-handed alpha
Helix 31
AD4
A
438 464Right-handed alpha
Helix 32
AD5
A
464 482Right-handed alpha
Helix 33
AD6
A
482 490Right-handed alpha
Helix 34
AD7
A
498 525Right-handed alpha
Helix 35
AD8
A
530 551Right-handed alpha
Helix 36
AD9
A
556 575Right-handed alpha
Helix 37
AE1
A
578 590Right-handed alpha
Helix 38
AE2
A
598 602Right-handed 310
Helix 39
AE3
A
603 627Right-handed alpha
Helix 40
AE4
A
627 633Right-handed alpha
Helix 41
AE5
A
634 646Right-handed alpha
Helix 42
AE6
A
647 649Right-handed 310
Helix 43
AE7
A
650 668Right-handed alpha
Helix 44
AE8
A
672 686Right-handed alpha
Helix 45
AE9
A
687 689Right-handed 310
Helix 46
AF1
A
690 697Right-handed alpha
Helix 47
AF2
A
699 708Right-handed alpha
Helix 48
AF3
A
708 719Right-handed alpha
Helix 49
AF4
A
733 751Right-handed alpha
Helix 50
AF5
A
752 765Right-handed alpha
Helix 51
AF6
A
769 785Right-handed alpha
Helix 52
AF7
A
787 801Right-handed alpha
Helix 53
AF8
A
802 807Right-handed 310
Helix 54
AF9
A
811 813Right-handed 310
Helix 55
AG1
A
814 823Right-handed alpha
Helix 56
AG2
A
835 848Right-handed alpha
Helix 57
AG3
A
850 878Right-handed alpha
Helix 58
AG4
A
879 885Right-handed alpha
Helix 59
AG5
A
887 897Right-handed alpha
Helix 60
AG6
A
911 922Right-handed alpha
Helix 61
AG7
A
922 929Right-handed alpha
Helix 62
AG8
A
934 968Right-handed alpha
Helix 63
AG9
A
973 1002Right-handed alpha
Helix 64
AH1
A
1017 1029Right-handed alpha
Helix 65
AH2
A
1030 1047Right-handed alpha
Helix 66
AH3
A
1049 1068Right-handed alpha
Helix 67
AH4
A
1071 1090Right-handed alpha
Helix 68
AH5
A
1093 1095Right-handed 310
Helix 69
AH6
A
1096 1118Right-handed alpha
Helix 70
AH7
A
1118 1130Right-handed alpha
Helix 71
AH8
A
1133 1144Right-handed alpha
Helix 72
AH9
A
1146 1164Right-handed alpha
Helix 73
AI1
B
24 34Right-handed alpha
Helix 74
AI2
B
78 83Right-handed 310
Helix 75
AI3
B
96 112Right-handed alpha
Helix 76
AI4
B
139 144Right-handed alpha
Helix 77
AI5
B
160 172Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 9D45.

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 56first strand
Strand 2
B
59 68anti-parallel
Strand 3
B
12 19parallel
Strand 4
B
88 93parallel
Strand 5
B
119 124parallel
Strand 6
B
147 150parallel
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