Analysis of interatomic Contacts of Structural Units in PDB entry:
9D4S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9D4S entry

There are 4 chains in PDB entry 9D4S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2ILE 409
C
 A 1 C 17
B
 SER 2ILE 409
P
 A 1 C 17
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 9D4S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 9Right-handed alpha
Helix 2
AA2
A
10 27Right-handed alpha
Helix 3
AA3
A
30 42Right-handed alpha
Helix 4
AA4
A
43 57Right-handed alpha
Helix 5
AA5
A
84 102Right-handed alpha
Helix 6
AA6
A
102 111Right-handed alpha
Helix 7
AA7
A
122 136Right-handed alpha
Helix 8
AA8
A
148 153Right-handed alpha
Helix 9
AA9
A
154 167Right-handed alpha
Helix 10
AB1
A
168 180Right-handed alpha
Helix 11
AB2
A
185 193Right-handed alpha
Helix 12
AB3
A
194 198Right-handed 310
Helix 13
AB4
A
210 220Right-handed alpha
Helix 14
AB5
A
220 228Right-handed alpha
Helix 15
AB6
A
247 265Right-handed alpha
Helix 16
AB7
A
303 331Right-handed alpha
Helix 17
AB8
A
339 358Right-handed alpha
Helix 18
AB9
A
364 391Right-handed alpha
Helix 19
AC1
A
393 402Right-handed alpha
Helix 20
AC2
A
405 409Right-handed 310
Helix 21
AC3
B
3 10Right-handed alpha
Helix 22
AC4
B
10 26Right-handed alpha
Helix 23
AC5
B
30 42Right-handed alpha
Helix 24
AC6
B
43 57Right-handed alpha
Helix 25
AC7
B
84 102Right-handed alpha
Helix 26
AC8
B
102 111Right-handed alpha
Helix 27
AC9
B
122 134Right-handed alpha
Helix 28
AD1
B
148 153Right-handed alpha
Helix 29
AD2
B
154 163Right-handed alpha
Helix 30
AD3
B
168 180Right-handed alpha
Helix 31
AD4
B
185 192Right-handed alpha
Helix 32
AD5
B
194 198Right-handed 310
Helix 33
AD6
B
210 220Right-handed alpha
Helix 34
AD7
B
220 228Right-handed alpha
Helix 35
AD8
B
247 265Right-handed alpha
Helix 36
AD9
B
303 329Right-handed alpha
Helix 37
AE1
B
339 358Right-handed alpha
Helix 38
AE2
B
363 391Right-handed alpha
Helix 39
AE3
B
393 402Right-handed alpha
Helix 40
AE4
B
405 409Right-handed 310
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There are 6 sheets in PDB entry 9D4S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 71first strand
Strand 2
A
77 82anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 237first strand
Strand 2
A
240 245anti-parallel
Strand 3
A
140 144anti-parallel
Strand 4
A
280 283anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
288 290first strand
Strand 2
A
293 295anti-parallel
Strand 3
A
300 302anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 70first strand
Strand 2
B
78 82anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
233 237first strand
Strand 2
B
240 245anti-parallel
Strand 3
B
140 144anti-parallel
Strand 4
B
280 283anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
288 290first strand
Strand 2
B
293 295anti-parallel
Strand 3
B
300 302anti-parallel
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