Analysis of interatomic Contacts of Structural Units in PDB entry:
9D4T

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9D4T entry

There are 3 chains in PDB entry 9D4T (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 24	SER 1231
B	VAL 24	SER 1231
C	VAL 24	SER 1231

There are100 helices in PDB entry 9D4T. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	40	45	Right-handed alpha
Helix 2	AA2	A	56	60	Right-handed 310
Helix 3	AA3	A	110	115	Right-handed 310
Helix 4	AA4	A	183	185	Right-handed 310
Helix 5	AA5	A	231	240	Right-handed alpha
Helix 6	AA6	A	277	282	Right-handed alpha
Helix 7	AA7	A	351	361	Right-handed alpha
Helix 8	AA8	A	395	399	Right-handed 310
Helix 9	AA9	A	404	408	Right-handed 310
Helix 10	AB1	A	419	425	Right-handed alpha
Helix 11	AB2	A	458	466	Right-handed 310
Helix 12	AB3	A	471	477	Right-handed alpha
Helix 13	AB4	A	533	538	Right-handed alpha
Helix 14	AB5	A	682	689	Right-handed alpha
Helix 15	AB6	A	694	703	Right-handed alpha
Helix 16	AB7	A	808	815	Right-handed alpha
Helix 17	AB8	A	817	825	Right-handed alpha
Helix 18	AB9	A	826	828	Right-handed 310
Helix 19	AC1	A	829	854	Right-handed alpha
Helix 20	AC2	A	855	857	Right-handed 310
Helix 21	AC3	A	875	878	Right-handed 310
Helix 22	AC4	A	891	900	Right-handed alpha
Helix 23	AC5	A	910	919	Right-handed alpha
Helix 24	AC6	A	922	926	Right-handed 310
Helix 25	AC7	A	929	934	Right-handed alpha
Helix 26	AC8	A	943	957	Right-handed alpha
Helix 27	AC9	A	974	987	Right-handed alpha
Helix 28	AD1	A	989	996	Right-handed alpha
Helix 29	AD2	A	996	1011	Right-handed alpha
Helix 30	AD3	A	1012	1015	Right-handed 310
Helix 31	AD4	A	1019	1042	Right-handed alpha
Helix 32	AD5	A	1053	1061	Right-handed alpha
Helix 33	AD6	A	1062	1109	Right-handed alpha
Helix 34	AD7	A	1226	1230	Right-handed 310
Helix 35	AD8	B	41	44	Right-handed 310
Helix 36	AD9	B	56	60	Right-handed 310
Helix 37	AE1	B	110	115	Right-handed 310
Helix 38	AE2	B	232	240	Right-handed alpha
Helix 39	AE3	B	351	361	Right-handed alpha
Helix 40	AE4	B	394	399	Right-handed 310
Helix 41	AE5	B	404	408	Right-handed 310
Helix 42	AE6	B	419	425	Right-handed alpha
Helix 43	AE7	B	458	466	Right-handed 310
Helix 44	AE8	B	471	477	Right-handed alpha
Helix 45	AE9	B	535	540	Right-handed 310
Helix 46	AF1	B	682	689	Right-handed alpha
Helix 47	AF2	B	690	693	Right-handed 310
Helix 48	AF3	B	694	703	Right-handed alpha
Helix 49	AF4	B	808	815	Right-handed alpha
Helix 50	AF5	B	817	825	Right-handed alpha
Helix 51	AF6	B	826	828	Right-handed 310
Helix 52	AF7	B	829	854	Right-handed alpha
Helix 53	AF8	B	855	857	Right-handed 310
Helix 54	AF9	B	891	900	Right-handed alpha
Helix 55	AG1	B	910	919	Right-handed alpha
Helix 56	AG2	B	924	929	Right-handed alpha
Helix 57	AG3	B	929	934	Right-handed alpha
Helix 58	AG4	B	943	957	Right-handed alpha
Helix 59	AG5	B	974	987	Right-handed alpha
Helix 60	AG6	B	989	996	Right-handed alpha
Helix 61	AG7	B	996	1011	Right-handed alpha
Helix 62	AG8	B	1012	1015	Right-handed 310
Helix 63	AG9	B	1019	1042	Right-handed alpha
Helix 64	AH1	B	1053	1061	Right-handed alpha
Helix 65	AH2	B	1062	1109	Right-handed alpha
Helix 66	AH3	B	1226	1230	Right-handed 310
Helix 67	AH4	C	41	44	Right-handed 310
Helix 68	AH5	C	56	60	Right-handed 310
Helix 69	AH6	C	111	115	Right-handed 310
Helix 70	AH7	C	183	185	Right-handed 310
Helix 71	AH8	C	231	240	Right-handed alpha
Helix 72	AH9	C	277	282	Right-handed alpha
Helix 73	AI1	C	351	361	Right-handed alpha
Helix 74	AI2	C	395	399	Right-handed 310
Helix 75	AI3	C	404	408	Right-handed 310
Helix 76	AI4	C	419	426	Right-handed alpha
Helix 77	AI5	C	440	445	Right-handed alpha
Helix 78	AI6	C	458	466	Right-handed 310
Helix 79	AI7	C	471	477	Right-handed alpha
Helix 80	AI8	C	535	539	Right-handed 310
Helix 81	AI9	C	682	689	Right-handed alpha
Helix 82	AJ1	C	694	703	Right-handed alpha
Helix 83	AJ2	C	808	815	Right-handed alpha
Helix 84	AJ3	C	817	825	Right-handed alpha
Helix 85	AJ4	C	826	828	Right-handed 310
Helix 86	AJ5	C	829	854	Right-handed alpha
Helix 87	AJ6	C	855	859	Right-handed 310
Helix 88	AJ7	C	891	900	Right-handed alpha
Helix 89	AJ8	C	910	919	Right-handed alpha
Helix 90	AJ9	C	922	926	Right-handed 310
Helix 91	AK1	C	929	934	Right-handed alpha
Helix 92	AK2	C	943	957	Right-handed alpha
Helix 93	AK3	C	974	986	Right-handed alpha
Helix 94	AK4	C	989	996	Right-handed alpha
Helix 95	AK5	C	997	1010	Right-handed alpha
Helix 96	AK6	C	1011	1015	Right-handed 310
Helix 97	AK7	C	1019	1042	Right-handed alpha
Helix 98	AK8	C	1053	1061	Right-handed alpha
Helix 99	AK9	C	1062	1109	Right-handed alpha
Helix 100	AL1	C	1226	1230	Right-handed 310

There are 50 sheets in PDB entry 9D4T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	39	first strand
Strand 2	A	107	109	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	64	first strand
Strand 2	A	286	293	parallel
Strand 3	A	271	276	anti-parallel
Strand 4	A	261	268	anti-parallel
Strand 5	A	123	127	anti-parallel
Strand 6	A	321	326	anti-parallel
Strand 7	A	90	93	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	82	first strand
Strand 2	A	328	336	anti-parallel
Strand 3	A	342	347	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	117	118	first strand
Strand 2	A	301	305	anti-parallel
Strand 3	A	153	162	anti-parallel
Strand 4	A	169	182	anti-parallel
Strand 5	A	187	197	anti-parallel
Strand 6	A	241	253	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	134	135	first strand
Strand 2	A	145	148	anti-parallel
Strand 3	A	318	319	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	368	371	first strand
Strand 2	A	663	668	anti-parallel
Strand 3	A	673	679	anti-parallel
Strand 4	A	715	718	anti-parallel
Strand 5	A	710	712	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	381	385	first strand
Strand 2	A	607	612	parallel
Strand 3	A	615	623	anti-parallel
Strand 4	A	652	656	anti-parallel
Strand 5	A	642	646	anti-parallel
Strand 6	A	634	636	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	390	391	first strand
Strand 2	A	416	418	parallel
Strand 3	A	589	590	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	409	413	first strand
Strand 2	A	449	456	anti-parallel
Strand 3	A	572	580	anti-parallel
Strand 4	A	486	492	anti-parallel
Strand 5	A	428	435	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	521	522	first strand
Strand 2	A	505	515	anti-parallel
Strand 3	A	557	566	anti-parallel
Strand 4	A	546	551	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	720	727	first strand
Strand 2	A	760	765	parallel
Strand 3	A	738	741	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1124	1133	first strand
Strand 2	A	1136	1155	anti-parallel
Strand 3	A	1173	1176	anti-parallel
Strand 4	A	1192	1195	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1124	1133	first strand
Strand 2	A	1136	1155	anti-parallel
Strand 3	A	781	799	anti-parallel
Strand 4	B	970	971	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	805	807	first strand
Strand 2	A	935	937	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	868	869	first strand
Strand 2	A	872	873	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	970	971	first strand
Strand 2	C	781	786	anti-parallel
Strand 3	C	1149	1155	anti-parallel
Strand 4	C	1173	1176	anti-parallel
Strand 5	C	1192	1195	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1209	1212	first strand
Strand 2	A	1167	1170	anti-parallel
Strand 3	A	1158	1159	anti-parallel
Strand 4	A	1219	1220	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	39	first strand
Strand 2	B	107	109	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	64	first strand
Strand 2	B	286	287	parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	74	82	first strand
Strand 2	B	328	336	anti-parallel
Strand 3	B	342	347	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	93	first strand
Strand 2	B	321	326	anti-parallel
Strand 3	B	123	127	anti-parallel
Strand 4	B	261	268	anti-parallel
Strand 5	B	271	275	anti-parallel
Strand 6	B	289	293	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	117	118	first strand
Strand 2	B	301	304	anti-parallel
Strand 3	B	154	162	anti-parallel
Strand 4	B	169	182	anti-parallel
Strand 5	B	187	197	anti-parallel
Strand 6	B	241	253	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	134	135	first strand
Strand 2	B	145	148	anti-parallel
Strand 3	B	318	319	parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	368	371	first strand
Strand 2	B	663	668	anti-parallel
Strand 3	B	673	679	anti-parallel
Strand 4	B	715	718	anti-parallel
Strand 5	B	710	711	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	382	385	first strand
Strand 2	B	607	612	parallel
Strand 3	B	615	623	anti-parallel
Strand 4	B	652	656	anti-parallel
Strand 5	B	642	646	anti-parallel
Strand 6	B	634	636	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	390	391	first strand
Strand 2	B	416	418	parallel
Strand 3	B	589	590	parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	409	413	first strand
Strand 2	B	449	456	anti-parallel
Strand 3	B	572	580	anti-parallel
Strand 4	B	486	492	anti-parallel
Strand 5	B	428	435	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	521	522	first strand
Strand 2	B	505	515	anti-parallel
Strand 3	B	557	566	anti-parallel
Strand 4	B	546	551	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	720	727	first strand
Strand 2	B	760	765	parallel
Strand 3	B	738	741	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1124	1133	first strand
Strand 2	B	1136	1155	anti-parallel
Strand 3	B	1173	1176	anti-parallel
Strand 4	B	1192	1195	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1124	1133	first strand
Strand 2	B	1136	1155	anti-parallel
Strand 3	B	781	799	anti-parallel
Strand 4	C	970	971	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	805	807	first strand
Strand 2	B	935	937	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	868	869	first strand
Strand 2	B	872	873	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1209	1212	first strand
Strand 2	B	1167	1170	anti-parallel
Strand 3	B	1158	1159	anti-parallel
Strand 4	B	1219	1220	parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	37	39	first strand
Strand 2	C	107	109	parallel

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There are 7 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	63	64	first strand
Strand 2	C	286	293	parallel
Strand 3	C	271	276	anti-parallel
Strand 4	C	261	268	anti-parallel
Strand 5	C	123	127	anti-parallel
Strand 6	C	321	326	anti-parallel
Strand 7	C	90	93	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	74	82	first strand
Strand 2	C	328	336	anti-parallel
Strand 3	C	342	347	anti-parallel

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There are 6 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	117	118	first strand
Strand 2	C	301	304	anti-parallel
Strand 3	C	154	162	anti-parallel
Strand 4	C	169	182	anti-parallel
Strand 5	C	187	197	anti-parallel
Strand 6	C	241	253	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	134	135	first strand
Strand 2	C	145	148	anti-parallel
Strand 3	C	318	319	parallel

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There are 5 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	368	371	first strand
Strand 2	C	663	668	anti-parallel
Strand 3	C	673	679	anti-parallel
Strand 4	C	715	718	anti-parallel
Strand 5	C	710	712	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	381	385	first strand
Strand 2	C	607	612	parallel
Strand 3	C	615	620	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	390	391	first strand
Strand 2	C	416	418	parallel
Strand 3	C	589	590	parallel

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There are 5 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	409	413	first strand
Strand 2	C	449	456	anti-parallel
Strand 3	C	572	580	anti-parallel
Strand 4	C	486	492	anti-parallel
Strand 5	C	428	435	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	521	522	first strand
Strand 2	C	505	515	anti-parallel
Strand 3	C	557	566	anti-parallel
Strand 4	C	546	551	anti-parallel

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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	634	636	first strand
Strand 2	C	642	646	anti-parallel
Strand 3	C	652	653	anti-parallel

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There are 3 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	720	727	first strand
Strand 2	C	760	765	parallel
Strand 3	C	738	741	anti-parallel

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There are 3 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	789	799	first strand
Strand 2	C	1136	1146	anti-parallel
Strand 3	C	1124	1133	anti-parallel

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There are 2 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	804	807	first strand
Strand 2	C	935	938	anti-parallel

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There are 2 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	868	869	first strand
Strand 2	C	872	873	anti-parallel

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There are 4 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1209	1212	first strand
Strand 2	C	1167	1170	anti-parallel
Strand 3	C	1158	1159	anti-parallel
Strand 4	C	1219	1220	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9D4T

Analysis of interatomic Contacts of Structural Units in PDB entry:
9D4T