Analysis of interatomic Contacts of Structural Units in PDB entry:
9D57

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9D57 entry

There are 5 chains in PDB entry 9D57 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 7	LEU 444
A	VAL 448	LYS 566
B	GLU 8	LEU 444
B	VAL 448	LEU 564
D	HIS 6	LEU 236

There are139 helices in PDB entry 9D57. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	27	Right-handed alpha
Helix 2	AA2	A	27	36	Right-handed alpha
Helix 3	AA3	A	46	57	Right-handed alpha
Helix 4	AA4	A	68	77	Right-handed alpha
Helix 5	AA5	A	89	93	Right-handed 310
Helix 6	AA6	A	94	96	Right-handed 310
Helix 7	AA7	A	126	132	Right-handed 310
Helix 8	AA8	A	149	158	Right-handed alpha
Helix 9	AA9	A	161	165	Right-handed 310
Helix 10	AB1	A	169	179	Right-handed alpha
Helix 11	AB2	A	180	182	Right-handed 310
Helix 12	AB3	A	189	199	Right-handed alpha
Helix 13	AB4	A	209	218	Right-handed alpha
Helix 14	AB5	A	244	256	Right-handed alpha
Helix 15	AB6	A	257	269	Right-handed alpha
Helix 16	AB7	A	368	372	Right-handed 310
Helix 17	AB8	A	383	389	Right-handed 310
Helix 18	AB9	A	436	441	Right-handed 310
Helix 19	AC1	A	448	452	Right-handed 310
Helix 20	AC2	A	455	461	Right-handed 310
Helix 21	AC3	A	462	467	Right-handed alpha
Helix 22	AC4	A	525	529	Right-handed 310
Helix 23	AC5	A	533	539	Right-handed 310
Helix 24	AC6	A	545	565	Right-handed alpha
Helix 25	AC7	B	16	27	Right-handed alpha
Helix 26	AC8	B	27	36	Right-handed alpha
Helix 27	AC9	B	46	57	Right-handed alpha
Helix 28	AD1	B	68	77	Right-handed alpha
Helix 29	AD2	B	89	93	Right-handed 310
Helix 30	AD3	B	94	96	Right-handed 310
Helix 31	AD4	B	126	132	Right-handed 310
Helix 32	AD5	B	149	158	Right-handed alpha
Helix 33	AD6	B	161	165	Right-handed 310
Helix 34	AD7	B	169	179	Right-handed alpha
Helix 35	AD8	B	180	182	Right-handed 310
Helix 36	AD9	B	189	199	Right-handed alpha
Helix 37	AE1	B	209	218	Right-handed alpha
Helix 38	AE2	B	244	256	Right-handed alpha
Helix 39	AE3	B	257	269	Right-handed alpha
Helix 40	AE4	B	383	389	Right-handed 310
Helix 41	AE5	B	436	441	Right-handed 310
Helix 42	AE6	B	448	452	Right-handed 310
Helix 43	AE7	B	455	461	Right-handed 310
Helix 44	AE8	B	462	467	Right-handed alpha
Helix 45	AE9	B	525	529	Right-handed 310
Helix 46	AF1	B	533	539	Right-handed 310
Helix 47	AF2	B	545	564	Right-handed alpha
Helix 48	AF3	D	16	27	Right-handed alpha
Helix 49	AF4	D	27	36	Right-handed alpha
Helix 50	AF5	D	46	57	Right-handed alpha
Helix 51	AF6	D	68	77	Right-handed alpha
Helix 52	AF7	D	89	93	Right-handed 310
Helix 53	AF8	D	94	96	Right-handed 310
Helix 54	AF9	D	126	132	Right-handed 310
Helix 55	AG1	D	149	158	Right-handed alpha
Helix 56	AG2	D	161	165	Right-handed 310
Helix 57	AG3	D	169	179	Right-handed alpha
Helix 58	AG4	D	180	182	Right-handed 310
Helix 59	AG5	D	189	199	Right-handed alpha
Helix 60	AG6	D	209	218	Right-handed alpha
Helix 61	AG7	D	244	256	Right-handed alpha
Helix 62	AG8	D	257	269	Right-handed alpha
Helix 63	AG9	D	383	389	Right-handed 310
Helix 64	AH1	D	436	441	Right-handed 310
Helix 65	AH2	D	448	452	Right-handed 310
Helix 66	AH3	D	455	461	Right-handed 310
Helix 67	AH4	D	462	467	Right-handed alpha
Helix 68	AH5	D	525	529	Right-handed 310
Helix 69	AH6	D	533	539	Right-handed 310
Helix 70	AH7	D	545	565	Right-handed alpha
Helix 71	AH8	F	16	27	Right-handed alpha
Helix 72	AH9	F	27	36	Right-handed alpha
Helix 73	AI1	F	46	57	Right-handed alpha
Helix 74	AI2	F	68	77	Right-handed alpha
Helix 75	AI3	F	89	93	Right-handed 310
Helix 76	AI4	F	94	96	Right-handed 310
Helix 77	AI5	F	126	132	Right-handed 310
Helix 78	AI6	F	149	158	Right-handed alpha
Helix 79	AI7	F	161	165	Right-handed 310
Helix 80	AI8	F	169	179	Right-handed alpha
Helix 81	AI9	F	180	182	Right-handed 310
Helix 82	AJ1	F	189	199	Right-handed alpha
Helix 83	AJ2	F	209	218	Right-handed alpha
Helix 84	AJ3	F	244	256	Right-handed alpha
Helix 85	AJ4	F	257	269	Right-handed alpha
Helix 86	AJ5	F	384	389	Right-handed 310
Helix 87	AJ6	F	436	441	Right-handed 310
Helix 88	AJ7	F	448	452	Right-handed 310
Helix 89	AJ8	F	455	461	Right-handed 310
Helix 90	AJ9	F	462	467	Right-handed alpha
Helix 91	AK1	F	525	529	Right-handed 310
Helix 92	AK2	F	533	539	Right-handed 310
Helix 93	AK3	F	545	564	Right-handed alpha
Helix 94	AK4	C	16	27	Right-handed alpha
Helix 95	AK5	C	27	36	Right-handed alpha
Helix 96	AK6	C	46	57	Right-handed alpha
Helix 97	AK7	C	68	77	Right-handed alpha
Helix 98	AK8	C	89	93	Right-handed 310
Helix 99	AK9	C	94	96	Right-handed 310
Helix 100	AL1	C	126	132	Right-handed 310
Helix 101	AL2	C	149	158	Right-handed alpha
Helix 102	AL3	C	161	165	Right-handed 310
Helix 103	AL4	C	169	179	Right-handed alpha
Helix 104	AL5	C	180	182	Right-handed 310
Helix 105	AL6	C	189	199	Right-handed alpha
Helix 106	AL7	C	209	218	Right-handed alpha
Helix 107	AL8	C	244	256	Right-handed alpha
Helix 108	AL9	C	257	269	Right-handed alpha
Helix 109	AM1	C	383	389	Right-handed 310
Helix 110	AM2	C	436	441	Right-handed 310
Helix 111	AM3	C	448	452	Right-handed 310
Helix 112	AM4	C	455	461	Right-handed 310
Helix 113	AM5	C	462	467	Right-handed alpha
Helix 114	AM6	C	525	529	Right-handed 310
Helix 115	AM7	C	533	539	Right-handed 310
Helix 116	AM8	C	545	564	Right-handed alpha
Helix 117	AM9	E	16	27	Right-handed alpha
Helix 118	AN1	E	27	36	Right-handed alpha
Helix 119	AN2	E	46	57	Right-handed alpha
Helix 120	AN3	E	68	77	Right-handed alpha
Helix 121	AN4	E	89	93	Right-handed 310
Helix 122	AN5	E	94	96	Right-handed 310
Helix 123	AN6	E	126	132	Right-handed 310
Helix 124	AN7	E	149	158	Right-handed alpha
Helix 125	AN8	E	161	165	Right-handed 310
Helix 126	AN9	E	169	179	Right-handed alpha
Helix 127	AO1	E	180	182	Right-handed 310
Helix 128	AO2	E	189	199	Right-handed alpha
Helix 129	AO3	E	209	218	Right-handed alpha
Helix 130	AO4	E	244	256	Right-handed alpha
Helix 131	AO5	E	257	269	Right-handed alpha
Helix 132	AO6	E	383	389	Right-handed 310
Helix 133	AO7	E	436	441	Right-handed 310
Helix 134	AO8	E	448	452	Right-handed 310
Helix 135	AO9	E	455	461	Right-handed 310
Helix 136	AP1	E	462	467	Right-handed alpha
Helix 137	AP2	E	525	529	Right-handed 310
Helix 138	AP3	E	533	539	Right-handed 310
Helix 139	AP4	E	545	564	Right-handed alpha

There are 18 sheets in PDB entry 9D57. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	42	first strand
Strand 2	A	9	13	parallel
Strand 3	A	63	67	parallel
Strand 4	A	223	237	anti-parallel
Strand 5	A	102	114	anti-parallel
Strand 6	A	204	208	anti-parallel
Strand 7	A	140	143	parallel
Strand 8	A	184	187	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	99	first strand
Strand 2	A	102	114	anti-parallel
Strand 3	A	223	237	anti-parallel
Strand 4	A	541	543	parallel

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There are 12 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	286	291	first strand
Strand 2	A	296	306	anti-parallel
Strand 3	A	312	323	anti-parallel
Strand 4	A	472	480	anti-parallel
Strand 5	A	485	495	anti-parallel
Strand 6	A	498	508	anti-parallel
Strand 7	A	392	402	parallel
Strand 8	A	405	416	anti-parallel
Strand 9	A	421	428	anti-parallel
Strand 10	A	353	363	anti-parallel
Strand 11	A	335	344	anti-parallel
Strand 12	A	286	291	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	42	first strand
Strand 2	B	9	13	parallel
Strand 3	B	63	67	parallel
Strand 4	B	222	237	anti-parallel
Strand 5	B	102	115	anti-parallel
Strand 6	B	204	208	anti-parallel
Strand 7	B	140	143	parallel
Strand 8	B	184	187	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	99	first strand
Strand 2	B	102	115	anti-parallel
Strand 3	B	222	237	anti-parallel
Strand 4	B	541	543	parallel

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There are 12 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	286	291	first strand
Strand 2	B	296	306	anti-parallel
Strand 3	B	312	323	anti-parallel
Strand 4	B	472	480	anti-parallel
Strand 5	B	485	495	anti-parallel
Strand 6	B	498	508	anti-parallel
Strand 7	B	392	402	parallel
Strand 8	B	405	416	anti-parallel
Strand 9	B	421	428	anti-parallel
Strand 10	B	353	363	anti-parallel
Strand 11	B	335	344	anti-parallel
Strand 12	B	286	291	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	38	42	first strand
Strand 2	D	9	13	parallel
Strand 3	D	63	67	parallel
Strand 4	D	222	237	anti-parallel
Strand 5	D	102	115	anti-parallel
Strand 6	D	204	208	anti-parallel
Strand 7	D	140	143	parallel
Strand 8	D	184	187	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	98	99	first strand
Strand 2	D	102	115	anti-parallel
Strand 3	D	222	237	anti-parallel
Strand 4	D	541	543	parallel

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There are 12 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	286	291	first strand
Strand 2	D	296	306	anti-parallel
Strand 3	D	312	323	anti-parallel
Strand 4	D	472	480	anti-parallel
Strand 5	D	485	495	anti-parallel
Strand 6	D	498	508	anti-parallel
Strand 7	D	392	402	parallel
Strand 8	D	405	416	anti-parallel
Strand 9	D	421	428	anti-parallel
Strand 10	D	353	363	anti-parallel
Strand 11	D	335	344	anti-parallel
Strand 12	D	286	291	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	38	42	first strand
Strand 2	F	9	13	parallel
Strand 3	F	63	67	parallel
Strand 4	F	222	237	anti-parallel
Strand 5	F	102	115	anti-parallel
Strand 6	F	204	208	anti-parallel
Strand 7	F	140	143	parallel
Strand 8	F	184	187	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	98	99	first strand
Strand 2	F	102	115	anti-parallel
Strand 3	F	222	237	anti-parallel
Strand 4	F	541	543	parallel

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There are 12 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	286	291	first strand
Strand 2	F	296	306	anti-parallel
Strand 3	F	312	323	anti-parallel
Strand 4	F	472	480	anti-parallel
Strand 5	F	485	495	anti-parallel
Strand 6	F	498	508	anti-parallel
Strand 7	F	392	402	parallel
Strand 8	F	405	416	anti-parallel
Strand 9	F	421	428	anti-parallel
Strand 10	F	353	363	anti-parallel
Strand 11	F	335	344	anti-parallel
Strand 12	F	286	291	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	38	42	first strand
Strand 2	C	9	13	parallel
Strand 3	C	63	67	parallel
Strand 4	C	222	237	anti-parallel
Strand 5	C	102	115	anti-parallel
Strand 6	C	204	208	anti-parallel
Strand 7	C	140	143	parallel
Strand 8	C	184	187	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	99	first strand
Strand 2	C	102	115	anti-parallel
Strand 3	C	222	237	anti-parallel
Strand 4	C	541	543	parallel

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There are 12 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	286	291	first strand
Strand 2	C	296	306	anti-parallel
Strand 3	C	312	323	anti-parallel
Strand 4	C	472	480	anti-parallel
Strand 5	C	485	495	anti-parallel
Strand 6	C	498	508	anti-parallel
Strand 7	C	392	402	parallel
Strand 8	C	405	416	anti-parallel
Strand 9	C	421	428	anti-parallel
Strand 10	C	353	363	anti-parallel
Strand 11	C	335	344	anti-parallel
Strand 12	C	286	291	anti-parallel

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There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	38	42	first strand
Strand 2	E	9	13	parallel
Strand 3	E	63	67	parallel
Strand 4	E	222	237	anti-parallel
Strand 5	E	102	115	anti-parallel
Strand 6	E	204	208	anti-parallel
Strand 7	E	140	143	parallel
Strand 8	E	184	187	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	98	99	first strand
Strand 2	E	102	115	anti-parallel
Strand 3	E	222	237	anti-parallel
Strand 4	E	541	543	parallel

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There are 12 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	286	291	first strand
Strand 2	E	296	306	anti-parallel
Strand 3	E	312	323	anti-parallel
Strand 4	E	472	480	anti-parallel
Strand 5	E	485	495	anti-parallel
Strand 6	E	498	508	anti-parallel
Strand 7	E	392	402	parallel
Strand 8	E	405	416	anti-parallel
Strand 9	E	421	428	anti-parallel
Strand 10	E	353	363	anti-parallel
Strand 11	E	335	344	anti-parallel
Strand 12	E	286	291	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9D57

Analysis of interatomic Contacts of Structural Units in PDB entry:
9D57