Analysis of interatomic Contacts of Structural Units in PDB entry:
9D5L

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9D5L entry

There are 2 chains in PDB entry 9D5L (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 381	HIS 537
C	T -1	T 10

There are 5 helices in PDB entry 9D5L. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	387	402	Right-handed alpha
Helix 2	AA2	A	472	487	Right-handed alpha
Helix 3	AA3	A	492	501	Right-handed alpha
Helix 4	AA4	A	513	516	Right-handed 310
Helix 5	AA5	A	520	536	Right-handed alpha

There are 2 sheets in PDB entry 9D5L. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	383	384	first strand
Strand 2	A	518	519	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	406	414	first strand
Strand 2	A	433	440	anti-parallel
Strand 3	A	445	451	anti-parallel
Strand 4	A	462	465	anti-parallel
Strand 5	A	505	508	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9D5L

Analysis of interatomic Contacts of Structural Units in PDB entry:
9D5L