Analysis of interatomic Contacts of Structural Units in PDB entry:
9D5M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9D5M entry

There are 2 chains in PDB entry 9D5M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 2	ALA 1202
B	ASP 2	ASN 1200

There are119 helices in PDB entry 9D5M. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	45	Right-handed alpha
Helix 2	AA2	A	47	77	Right-handed alpha
Helix 3	AA3	A	85	97	Right-handed alpha
Helix 4	AA4	A	99	103	Right-handed 310
Helix 5	AA5	A	104	125	Right-handed alpha
Helix 6	AA6	A	142	150	Right-handed alpha
Helix 7	AA7	A	152	169	Right-handed alpha
Helix 8	AA8	A	171	190	Right-handed alpha
Helix 9	AA9	A	193	200	Right-handed alpha
Helix 10	AB1	A	206	238	Right-handed alpha
Helix 11	AB2	A	251	253	Right-handed 310
Helix 12	AB3	A	261	263	Right-handed 310
Helix 13	AB4	A	264	269	Right-handed alpha
Helix 14	AB5	A	281	286	Right-handed alpha
Helix 15	AB6	A	290	303	Right-handed alpha
Helix 16	AB7	A	311	317	Right-handed alpha
Helix 17	AB8	A	352	372	Right-handed alpha
Helix 18	AB9	A	386	400	Right-handed alpha
Helix 19	AC1	A	401	409	Right-handed alpha
Helix 20	AC2	A	417	433	Right-handed alpha
Helix 21	AC3	A	435	451	Right-handed alpha
Helix 22	AC4	A	458	471	Right-handed alpha
Helix 23	AC5	A	485	489	Right-handed 310
Helix 24	AC6	A	498	520	Right-handed alpha
Helix 25	AC7	A	524	528	Right-handed 310
Helix 26	AC8	A	533	545	Right-handed alpha
Helix 27	AC9	A	551	561	Right-handed alpha
Helix 28	AD1	A	567	574	Right-handed alpha
Helix 29	AD2	A	574	589	Right-handed alpha
Helix 30	AD3	A	606	610	Right-handed 310
Helix 31	AD4	A	616	648	Right-handed alpha
Helix 32	AD5	A	650	676	Right-handed alpha
Helix 33	AD6	A	686	697	Right-handed alpha
Helix 34	AD7	A	704	724	Right-handed alpha
Helix 35	AD8	A	740	747	Right-handed alpha
Helix 36	AD9	A	750	771	Right-handed alpha
Helix 37	AE1	A	772	787	Right-handed alpha
Helix 38	AE2	A	793	798	Right-handed alpha
Helix 39	AE3	A	804	836	Right-handed alpha
Helix 40	AE4	A	876	884	Right-handed alpha
Helix 41	AE5	A	887	903	Right-handed alpha
Helix 42	AE6	A	909	915	Right-handed alpha
Helix 43	AE7	A	950	970	Right-handed alpha
Helix 44	AE8	A	982	998	Right-handed alpha
Helix 45	AE9	A	999	1005	Right-handed alpha
Helix 46	AF1	A	1011	1014	Right-handed 310
Helix 47	AF2	A	1015	1029	Right-handed alpha
Helix 48	AF3	A	1032	1049	Right-handed alpha
Helix 49	AF4	A	1053	1055	Right-handed 310
Helix 50	AF5	A	1056	1068	Right-handed alpha
Helix 51	AF6	A	1082	1087	Right-handed 310
Helix 52	AF7	A	1096	1117	Right-handed alpha
Helix 53	AF8	A	1122	1126	Right-handed 310
Helix 54	AF9	A	1131	1143	Right-handed alpha
Helix 55	AG1	A	1144	1148	Right-handed 310
Helix 56	AG2	A	1149	1158	Right-handed alpha
Helix 57	AG3	A	1165	1172	Right-handed alpha
Helix 58	AG4	A	1172	1187	Right-handed alpha
Helix 59	AG5	B	2	6	Right-handed 310
Helix 60	AG6	B	13	42	Right-handed alpha
Helix 61	AG7	B	48	75	Right-handed alpha
Helix 62	AG8	B	76	83	Right-handed alpha
Helix 63	AG9	B	85	97	Right-handed alpha
Helix 64	AH1	B	98	103	Right-handed 310
Helix 65	AH2	B	104	124	Right-handed alpha
Helix 66	AH3	B	141	150	Right-handed alpha
Helix 67	AH4	B	152	169	Right-handed alpha
Helix 68	AH5	B	171	190	Right-handed alpha
Helix 69	AH6	B	193	201	Right-handed alpha
Helix 70	AH7	B	206	218	Right-handed alpha
Helix 71	AH8	B	218	238	Right-handed alpha
Helix 72	AH9	B	261	268	Right-handed 310
Helix 73	AI1	B	280	287	Right-handed alpha
Helix 74	AI2	B	291	304	Right-handed alpha
Helix 75	AI3	B	310	316	Right-handed alpha
Helix 76	AI4	B	352	372	Right-handed alpha
Helix 77	AI5	B	377	381	Right-handed 310
Helix 78	AI6	B	386	400	Right-handed alpha
Helix 79	AI7	B	401	408	Right-handed alpha
Helix 80	AI8	B	417	433	Right-handed alpha
Helix 81	AI9	B	435	451	Right-handed alpha
Helix 82	AJ1	B	458	471	Right-handed alpha
Helix 83	AJ2	B	484	489	Right-handed 310
Helix 84	AJ3	B	498	519	Right-handed alpha
Helix 85	AJ4	B	524	528	Right-handed 310
Helix 86	AJ5	B	533	546	Right-handed alpha
Helix 87	AJ6	B	551	560	Right-handed alpha
Helix 88	AJ7	B	567	574	Right-handed alpha
Helix 89	AJ8	B	574	589	Right-handed alpha
Helix 90	AJ9	B	616	647	Right-handed alpha
Helix 91	AK1	B	650	677	Right-handed alpha
Helix 92	AK2	B	686	696	Right-handed alpha
Helix 93	AK3	B	704	724	Right-handed alpha
Helix 94	AK4	B	741	748	Right-handed alpha
Helix 95	AK5	B	750	771	Right-handed alpha
Helix 96	AK6	B	772	788	Right-handed alpha
Helix 97	AK7	B	791	798	Right-handed alpha
Helix 98	AK8	B	799	801	Right-handed 310
Helix 99	AK9	B	804	836	Right-handed alpha
Helix 100	AL1	B	849	851	Right-handed 310
Helix 101	AL2	B	859	867	Right-handed 310
Helix 102	AL3	B	875	883	Right-handed alpha
Helix 103	AL4	B	887	903	Right-handed alpha
Helix 104	AL5	B	909	914	Right-handed alpha
Helix 105	AL6	B	950	970	Right-handed alpha
Helix 106	AL7	B	987	998	Right-handed alpha
Helix 107	AL8	B	999	1005	Right-handed alpha
Helix 108	AL9	B	1015	1031	Right-handed alpha
Helix 109	AM1	B	1032	1049	Right-handed alpha
Helix 110	AM2	B	1053	1055	Right-handed 310
Helix 111	AM3	B	1056	1068	Right-handed alpha
Helix 112	AM4	B	1082	1087	Right-handed 310
Helix 113	AM5	B	1089	1093	Right-handed 310
Helix 114	AM6	B	1096	1118	Right-handed alpha
Helix 115	AM7	B	1122	1126	Right-handed 310
Helix 116	AM8	B	1131	1143	Right-handed alpha
Helix 117	AM9	B	1149	1158	Right-handed alpha
Helix 118	AN1	B	1165	1172	Right-handed alpha
Helix 119	AN2	B	1172	1187	Right-handed alpha

There are 8 sheets in PDB entry 9D5M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	248	249	first strand
Strand 2	A	473	474	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	726	728	first strand
Strand 2	A	734	736	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	846	847	first strand
Strand 2	A	1071	1072	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	248	249	first strand
Strand 2	B	473	474	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	333	334	first strand
Strand 2	B	345	346	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	727	728	first strand
Strand 2	B	734	735	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	846	847	first strand
Strand 2	B	1071	1072	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	931	935	first strand
Strand 2	B	940	944	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9D5M

Analysis of interatomic Contacts of Structural Units in PDB entry:
9D5M